Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1878 |
Symbol | apbE |
ID | 5135954 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1997115 |
End bp | 1998218 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640533335 |
Product | thiamin biosynthesis lipoprotein ApbE |
Protein accession | YP_001217802 |
Protein GI | 147673710 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTTTTTTA CAAATTGGAT ATTGAAAGTG TCGATGGTTA TCTGGTTTAG GGTATCGGTA TTTCCCATAT CAATTTTTAA CTATGAAAGG AGTAAACAAG TGAGAAATTG GCTTGTTGCA TTAGCTTCTC TTCTCTTGCT GGCTGGCTGT GAAAAGCCCG CAGAGCAGGT ACATCTCAGT GGCCCAACCA TGGGAACCAC TTACAACATC AAATACATTC AACAGCCGGG AATTGCGGAT TCGAAAACAC TGCAAACCGA GATTGATCGA CTCCTTGAAG AAGTGAACGA TCAAATGTCG ACTTACCGTA AAGACTCTGA GCTCAGCCGT TTTAACCAGC ATACCAGTAG CGAACCTTTT GCCGTTTCTA CACAAACGTT AACCGTGGTG AAAGAGGCGA TTCGTTTGAA CGGTCTTACT GAAGGTGCTT TAGATGTGAC CGTCGGACCT TTGGTTAATC TGTGGGGATT TGGCCCTGAA GCCCGTCCTG ATGTGGTACC AACCGATGAA GAGCTGAATG CGCGTCGTGC TATTACTGGC ATTGAGCATC TGACGATTGA AGGGAATACG CTGAGTAAAG ATATTCCTGA ACTGTATGTC GACTTGTCTA CGATTGCCAA AGGTTGGGGA GTAGATGTGG TCGCCGATTA CCTTCAATCT CAAGGTATCG AAAACTACAT GGTAGAAATT GGCGGAGAAA TCCGTTTGAA AGGACTGAAC CGTGATGGTG TTCCCTGGCG TATTGCGATA GAAAAGCCAA GTGTTGATCA GCGTAGTGTA CAAGAGATCA TCGAACCGGG TGATTATGCG ATCGCAACCT CCGGTGATTA CCGTAACTAC TTTGAGCAAG ATGGCGTTCG TTACTCGCAT ATCATCGATC CAACTACCGG ACGCCCAATC AATAACCGCG TGGTCTCCGT GACGGTACTG GATAAGTCTT GTATGACGGC GGATGGCTTA GCGACAGGCT TGATGGTCAT GGGCGAAGAG CGTGGTATGG CTGTCGCAGA AGCCAACCAG ATCCCGGTTT TAATGATTGT GAAAACGGAT GATGGCTTTA AAGAGTACGC ATCAAGCAGC TTTAAACCGT TTTTAAGTAA GTAA
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Protein sequence | MFFTNWILKV SMVIWFRVSV FPISIFNYER SKQVRNWLVA LASLLLLAGC EKPAEQVHLS GPTMGTTYNI KYIQQPGIAD SKTLQTEIDR LLEEVNDQMS TYRKDSELSR FNQHTSSEPF AVSTQTLTVV KEAIRLNGLT EGALDVTVGP LVNLWGFGPE ARPDVVPTDE ELNARRAITG IEHLTIEGNT LSKDIPELYV DLSTIAKGWG VDVVADYLQS QGIENYMVEI GGEIRLKGLN RDGVPWRIAI EKPSVDQRSV QEIIEPGDYA IATSGDYRNY FEQDGVRYSH IIDPTTGRPI NNRVVSVTVL DKSCMTADGL ATGLMVMGEE RGMAVAEANQ IPVLMIVKTD DGFKEYASSS FKPFLSK
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