Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1868 |
Symbol | |
ID | 5137795 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1985227 |
End bp | 1986519 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640533325 |
Product | hypothetical protein |
Protein accession | YP_001217792 |
Protein GI | 147675075 |
COG category | [R] General function prediction only |
COG ID | [COG2252] Permeases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.0492643 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTGGAAA AGCTTTTTAA ACTCAGTGAA TACGGCACGA ACGTGCGCAC TGAGATCCTC GCTGGGGTCA CGACTTTCCT GACCATGGCT TACATTATTT TTGTTAACCC AGCCATTTTG TCGGATGCGG GAATGGATCG CGGTGCGGTT TTCGTGGCGA CCTGTTTGGC GGCCGCGATT GGCTGTTTCA TTATGGGTTT TATTGCCAAT TATCCTATCG CTCAAGCGCC AGGTATGGGG CTTAATGCCT TCTTCACTTA TGGTGTGGTT CTTGGTATGG GACACACTTG GCAAGTCGCT CTGGCCGCGG TGTTCTGCTC GGGCGTGCTG TTTATCCTAC TCAGCTTGTT CAAAATCCGT GAGTGGATCA TCAACTCGAT TCCTCACTCT TTACGTACTG GCATTTCAGC GGGTATTGGT CTGTTCTTAG CTTTCATCGC ATTAAAAAAT GCGGGCATTG TGGTCGATAA TCCGGCAACA CTGGTTTCTT TAGGCGCAAT TACCTCGCTG CATGCGGTGT TGGCAGCAGT GGGCTTCTTC CTGACGATTG GTTTAGTCTA TCGCGGTGTC AAAGGCGCGG TGATGATTGC TATTTTAGCG GTGACAGCTC TCGGTCTCGT ATTTGGTGAT GTGCAATGGG GCGGCATTAT GTCTACGCCT CCGAGTATCG CGCCGACCTT CATGCAACTC GATTTCTCTG CTGTCTTTGA GATCGGCATG ATTTCTGTGG TGTTTGCGTT CTTGTTTGTT GACCTATTTG ACACTGCTGG CACCTTGGTT GGCGTTGCAA CCAAAGCGGG ATTGATCGAA AAAGATGGCA AAATTCCGCG CCTGAATCGT GCCCTGTTGG CGGATTCGAC AGCAACGTCT GTCGGCGCTC TGCTCGGTAC TTCAAACACC ACTTCTTATA TTGAAAGTGT CTCCGGTGTT GCTGTTGGTG GCCGTACTGG TTTAACTGCT GTGGTGGTTG GCATTTTGTT CCTTCTTGCA TTATTCTTCT CGCCACTAGC GGGTATGATC CCAGCTTATG CGACGGCCGG TGCACTTTTC TATGTTGCTA TTCTGATGAT GTCGGGGTTA GTGAGCATTG ATTGGCGTGA TCTGACTGAA GCGGCACCCA CTGTTGTTAC CTGTTTGATG ATGCCTCTGA CATTCTCGAT TGCGGAAGGT ATCTCACTCG GTTTTATTGC TTATGCCGCA ATCAAACTTT TCAGTGGTAA AGGACGCAGC GTCTCTCTCA GTGTATGGGT TATGGCGGCC ATTTTTGTCA TCAAATACAT TTTGGCGGCG TAA
|
Protein sequence | MLEKLFKLSE YGTNVRTEIL AGVTTFLTMA YIIFVNPAIL SDAGMDRGAV FVATCLAAAI GCFIMGFIAN YPIAQAPGMG LNAFFTYGVV LGMGHTWQVA LAAVFCSGVL FILLSLFKIR EWIINSIPHS LRTGISAGIG LFLAFIALKN AGIVVDNPAT LVSLGAITSL HAVLAAVGFF LTIGLVYRGV KGAVMIAILA VTALGLVFGD VQWGGIMSTP PSIAPTFMQL DFSAVFEIGM ISVVFAFLFV DLFDTAGTLV GVATKAGLIE KDGKIPRLNR ALLADSTATS VGALLGTSNT TSYIESVSGV AVGGRTGLTA VVVGILFLLA LFFSPLAGMI PAYATAGALF YVAILMMSGL VSIDWRDLTE AAPTVVTCLM MPLTFSIAEG ISLGFIAYAA IKLFSGKGRS VSLSVWVMAA IFVIKYILAA
|
| |