| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1734 |
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| Symbol | dapE |
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| ID | 5137584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1856356 |
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| End bp | 1857489 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640533191 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001217673 |
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| Protein GI | 147674209 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 47 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGATA GCCCTGTACT GGCTCTGGCA AAAGAGCTGA TTAGCCGCCA ATCCGTTACT
CCTGCCGACG CAGGATGTCA GGATCTGATG ATTGAGCGCT TAAAAGCGCT GGGTTTCGAA
ATTGAAAGCA TGGTGTTTGA AGACACCACC AACTTCTGGG CTCGCCGCGG CACGCAATCT
CCCCTGTTTG TTTTTGCAGG TCATACCGAT GTGGTGCCTG CCGGCCCTTT GTCGCAGTGG
CACACTCCTC CTTTTGAGCC GACTGTGATT GATGGTTTCC TGCATGGGCG TGGCGCAGCA
GATATGAAAG GCTCGCTGGC TTGTATGATT GTGGCGGTAG AGCGTTTTAT TGCCGAACAT
CCCGATCATC AAGGCTCAAT CGGTTTTTTG ATCACTTCTG ATGAAGAAGG CCCCTTTATC
AACGGTACCG TCCGTGTCGT AGAAACGCTA ATGGCACGTA ACGAACTGAT CGATATGTGT
ATCGTCGGTG AGCCGTCCAG TACCCTAGCC GTAGGCGATG TGGTGAAAAA TGGCCGTCGT
GGCTCCATCA CGGGGGATTT GAAGGTAAAA GGCACTCAAG GCCATGTTGC TTATCCGCAT
CTGGCTAATA ATCCCGTGCA TAAAGCGCTC CCCGCATTGG CCGAACTCGC CGCCACCCAA
TGGGATGAAG GTAACGCCTA TTTCCCCCCC ACCAGCTTTC AAATTCCTAA CCTGCAAGCG
GGTACTGGCG CATCGAATGT CATCCCCGGT GAATTTGATG TGCAGTTTAA CTTCCGCTTT
AGTACAGAGC TCACCGATGA AGAGATCAAA CGCCGCGTAC ATTCGGTCTT GGATGCTCAC
GGGCTCGATT ACGGTGTGAA ATGGACTCTC AGCGGCCAAC CCTTCCTGAC CGATACGGGC
GAACTACTGG CAGCAGTAGT CGCGGCCGTA GAGGAAGTAA ACCATCAAGC TCCTGCGTTA
TTGACGACAG GCGGAACATC TGATGGTCGC TTCATTGCCC AAATGGGCGC ACAAGTGGTT
GAGCTCGGTC CCGTGAATGC CACCATTCAC AAGGTAAACG AGTGTGTACG TATTGCGGAT
TTAGAGAAAT TGACCGATAT GTATCAAAAA ACCTTAAATC ATCTTTTAGG CTAA
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| Protein sequence | MTDSPVLALA KELISRQSVT PADAGCQDLM IERLKALGFE IESMVFEDTT NFWARRGTQS
PLFVFAGHTD VVPAGPLSQW HTPPFEPTVI DGFLHGRGAA DMKGSLACMI VAVERFIAEH
PDHQGSIGFL ITSDEEGPFI NGTVRVVETL MARNELIDMC IVGEPSSTLA VGDVVKNGRR
GSITGDLKVK GTQGHVAYPH LANNPVHKAL PALAELAATQ WDEGNAYFPP TSFQIPNLQA
GTGASNVIPG EFDVQFNFRF STELTDEEIK RRVHSVLDAH GLDYGVKWTL SGQPFLTDTG
ELLAAVVAAV EEVNHQAPAL LTTGGTSDGR FIAQMGAQVV ELGPVNATIH KVNECVRIAD
LEKLTDMYQK TLNHLLG
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