| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1703 |
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| Symbol | fliR |
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| ID | 5135187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1829335 |
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| End bp | 1830117 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640533160 |
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| Product | flagellar biosynthesis protein FliR |
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| Protein accession | YP_001217642 |
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| Protein GI | 147673452 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
| Num covering plasmid clones | 57 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAATATC CCGCCAGTGT CGTCCTTGAT TTCATCGCCA ACTATTTCTG GCCGTATACC
CGAATTGCGG CCATGTTGAT GGTGATGACG GTGACTGGCG CGCGCTTTGT GCCTGCTCGA
GTACGTCTCT ACTTAGGGTT AGCGCTCACT TTTGCGGTGA TGCCCGCAAT TCCTGCGGTT
CCTTCCGATA TTGCCTTGCT CTCGCTACAA GGATTCATGA TCACCTTCGA ACAGATTGTG
ATCGGTGTGG CGATGGGCAT GGTCACCCAG TTTTTGGTGC AAATCTTTGT CATGCTCGGT
CAAATCCTCG GTATGCAATC GAGCTTAGGT TTTGCCTCCA TGGTCGACCC CGCTAACGGA
CAAAATACTC CGCTGCTCGG TCAGCTTTTT ATGTTACTGG CCACGCTGTT TTTCCTTGTC
AGTGATGGCC ATTTGAAAAT GATCCAACTG GTGGTCTTCA GTTTTAAAAG TTTACCGATT
GGCAGCGGCT CACTGACGAC GGTGGATTTT CGTGAGTTAG CGCTGTGGCT CGGTATCATG
TTTAAAGCAT CATTGGCCGT CTCACTGTCG GGCATTATTG CACTGTTAAC CGTGAACCTC
TCCTTTGGGG TAATGACACG TGCGGCGCCT CAGCTCAACA TTTTCTCGCT CGGTTTTTCG
TTTGCGCTCT TGGTGGGGTT ATTGCTCTGT TGGTACATCG TCCACGGTTT GTACACCCAT
TACGATATTT ATTGGCAAGA GGCGGAAGAG CAAGTTTGCC GTCTCATTCG CTTAAACTGT
TAG
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| Protein sequence | MEYPASVVLD FIANYFWPYT RIAAMLMVMT VTGARFVPAR VRLYLGLALT FAVMPAIPAV
PSDIALLSLQ GFMITFEQIV IGVAMGMVTQ FLVQIFVMLG QILGMQSSLG FASMVDPANG
QNTPLLGQLF MLLATLFFLV SDGHLKMIQL VVFSFKSLPI GSGSLTTVDF RELALWLGIM
FKASLAVSLS GIIALLTVNL SFGVMTRAAP QLNIFSLGFS FALLVGLLLC WYIVHGLYTH
YDIYWQEAEE QVCRLIRLNC
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