Gene VC0395_A1677 details

Gene Information

• Locus tag: VC0395_A1677
• Symbol: sdhC
• ID: 5136276
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1805471
• End bp: 1805863
• Gene Length: 393 bp
• Protein Length: 130 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640533134
• Product: succinate dehydrogenase cytochrome b556 large membrane subunit
• Protein accession: YP_001217616
• Protein GI: 147673409
• COG category: [C] Energy production and conversion
• COG ID: [COG2009] Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
• TIGRFAM ID: [TIGR02970] succinate dehydrogenase, cytochrome b556 subunit

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 0.129902
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCAAGC CCGTGAAAGA AAGAAAGTCA AGACCTGTTA ATTTAGATTT GCAGACCATT 
AGCTTTCCGA TCTCAGCAAT CGCATCCATC CTCCACCGTG TGTCGGGGGT GATTACGTTT 
GTTGCGGTTG GGATTTTGCT TTGGTTGTTA TCCCTCTCTC TCTCCTCACC TGTCGGATTT 
ATGGAAGCGA GCAACATTGT TGACAGCTTT TTCGTGAAAT TCGTGTTGTG GGGAATTCTA 
ACTGCTCTGG CCTACCACAT TGCTGGTGGG ATTCGTCATT TATTGATGGA TCTTGGTCAC 
TTTGAAGAGC TGGAATCCGG TGCCGCGAGC GCCAAAGTAG CTTTTGCCGC TACGGTTGTA 
TTGTCTCTAC TGGCGGGGGT TCTGGTATGG TAA 

 

Protein sequence

MSKPVKERKS RPVNLDLQTI SFPISAIASI LHRVSGVITF VAVGILLWLL SLSLSSPVGF 
MEASNIVDSF FVKFVLWGIL TALAYHIAGG IRHLLMDLGH FEELESGAAS AKVAFAATVV 
LSLLAGVLVW