| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1620 |
|---|
| Symbol | |
|---|
| ID | 5136064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1744020 |
|---|
| End bp | 1744658 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640533077 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001217561 |
|---|
| Protein GI | 147673533 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2095] Multiple antibiotic transporter |
|---|
| TIGRFAM ID | [TIGR00427] membrane protein, MarC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.079521 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGCT TTGAAATTGC TATATTCCTC CAATTTTTTC TCGGCCTTGT CGCTGCAGTA
AACCCTGTAG GCATTATGCC GGTATTTGTT TCTCTTACTG GCCACATGAC GCTGGAAGAG
AAAAATAAAA CCGCAGCGAC CGCGAATATC GCCGTGGCCA TCATCTTGAT CATCGCCTTA
CTGGCGGGTC AAATGCTGCT CGACCTCTTC AGTATTTCTC TCGATTCATT CCGTGTTGCA
GGCGGTTTAC TGCTGCTTAG CATCGCCTTT TCGATGATGA GCGGTAAGCT CGGTGAGGAT
AAGCAGAATA AACAGGAAAA ATCCGAATAC ATCAGCCGTG AGCAAATTGC GGTTGTCCCA
CTGGCGATGC CACTCATGGC CGGCCCCGGA GCCATCAGTT CAACGATTGT TTATGGCTCA
CGTTATCCAA ATATGCTGGA TACCTTGGGG ATCATTTTGA CCGTTGTCGC CTTCAGTTTT
TGCTCTTGGC TGCTTTTCCG TTCAGCACCG TATATCGTCC GCTTGCTCGG ACAAACCGGT
ATCAACGTAA TCACCCGTAT CATGGGTCTG ATCCTTGGTG CGCTCGGTAT TGAATTTATT
GCCAATGGGC TACGTAACTT GTTTCCCGGC TTAGCGTAA
|
|---|
| Protein sequence | MQSFEIAIFL QFFLGLVAAV NPVGIMPVFV SLTGHMTLEE KNKTAATANI AVAIILIIAL
LAGQMLLDLF SISLDSFRVA GGLLLLSIAF SMMSGKLGED KQNKQEKSEY ISREQIAVVP
LAMPLMAGPG AISSTIVYGS RYPNMLDTLG IILTVVAFSF CSWLLFRSAP YIVRLLGQTG
INVITRIMGL ILGALGIEFI ANGLRNLFPG LA
|
|---|
| |