Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1529 |
Symbol | |
ID | 5136250 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1643802 |
End bp | 1644464 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640532987 |
Product | hypothetical protein |
Protein accession | YP_001217472 |
Protein GI | 147673644 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0560] Phosphoserine phosphatase |
TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like [TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAGC CCCTTTATGT GTTTGATTTG GATGACACCC TGATTGATGG GGACTGCGCA ATGATTTGGA ATGCGTTTCT TGCTGAGAAA GGCATTGCGA CGGAGCGCAA TTTTGTGGAA GAAGATCGAA GACGCATGGC GCTGTACGCG CAAGGCAAGA TGGATATGGC GGAATACATT GCTTTTGCGA TGCAGCCATT AGCGCAAGTG CCAAGTACAA CCGTGCAAGA TTGGGTGGAA GAGTGCGTGT CACGCTGGAT TGTTCCAAAA CAATTTGCCC AAGCTCGTGA GTTGATTGCG CAGTTAAAGC AGCAAGGTAA TACCTGCTTA ATTATTTCCG CTTCTGTTTC GTTTTTAGTG AAAACCGTCG CTCAACGTTT CGGAATTGAA CACGCGTTAG GGATTGATCT TGTGAGCCAA AACGGTTGCT ACAGCGGTAA CATCGAGGGC GTTGCTAGCT ACCGAGAAGG TAAAGTGCTG CGTTTACAAC AATGGTTAGC GGAGCAGAAT GAAACCTATC ACGACGTTCA TTTTTATACT GACTCCATCA ATGATCTGCC GTTATGTCAG CATGCCGATT TCGCGTATGT GGTCAATCCC TGCCCGCGCT TGAAAGCTCA GGCTGAGCAG CATGGTTGGC CCATATTATC TTGGGCGGTG TAA
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Protein sequence | MSKPLYVFDL DDTLIDGDCA MIWNAFLAEK GIATERNFVE EDRRRMALYA QGKMDMAEYI AFAMQPLAQV PSTTVQDWVE ECVSRWIVPK QFAQARELIA QLKQQGNTCL IISASVSFLV KTVAQRFGIE HALGIDLVSQ NGCYSGNIEG VASYREGKVL RLQQWLAEQN ETYHDVHFYT DSINDLPLCQ HADFAYVVNP CPRLKAQAEQ HGWPILSWAV
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