| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1518 |
|---|
| Symbol | |
|---|
| ID | 5136671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1633470 |
|---|
| End bp | 1634168 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640532976 |
|---|
| Product | putative C4-dicarboxylate transport protein DctQ |
|---|
| Protein accession | YP_001217461 |
|---|
| Protein GI | 147675606 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCTGTTC GTCACACTAT TAGAGCGATG TATCACATGG AACAGTCATG GTTTTCGAGA
GTCGGCCAGT TTACCGACTC GATTGAAGAA TTTCTGATCG CGTTTTTTAT GGGCGCGATG
ACGCTACTGA CCTTTGCAAA CGTCATCATG CGTTATCTAT TCAACGACAA CATTCTCTGG
GCGCTTGAGG GAACAGTATT TATGTTCGCT TGGATGGTGC TTATCGGGGC TTCATTTGGG
GTAAAACGCC ACTTTCATAT TGGTGTCGAT GTGCTGATCA ATATCGCACC AGCACGATTG
CGTAAGCTGT ATGCATTGGT TGCTGTGGCC TGCTGTTTGG CATTTTCAAT CCTCTTACTG
ATCGGTTCTT GGAACTACTG GTACCCCTTT ATTAGCGAAC GTGCATGGTA TGAAACCGAT
GATATTCCCA TGCCTGAAAT GCTGCAGTTT CTGGCGGATT GGTTCAATGA AGGTGAGCGC
TATGAAAAGC TGCCGCGCTT TATCCCTTAT GCCGCTCTGC CGATAGGTAT GGCGCTGCTG
ACTTTCCGGT TTCTGCAGAT CGCTTGGCAA ATTCTCACTG GCAAACTGGA TCGCATGATT
GCCGGTCATG AAGCCGAAGA AGATTTAGAA GCACTGAAAG CGGAGCTTTC AGAAGCGGGT
GAGGCAATGA TGCCTAAGAC TCAAGGCAAG GAGAAGTAA
|
|---|
| Protein sequence | MSVRHTIRAM YHMEQSWFSR VGQFTDSIEE FLIAFFMGAM TLLTFANVIM RYLFNDNILW
ALEGTVFMFA WMVLIGASFG VKRHFHIGVD VLINIAPARL RKLYALVAVA CCLAFSILLL
IGSWNYWYPF ISERAWYETD DIPMPEMLQF LADWFNEGER YEKLPRFIPY AALPIGMALL
TFRFLQIAWQ ILTGKLDRMI AGHEAEEDLE ALKAELSEAG EAMMPKTQGK EK
|
|---|
| |