| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1517 |
|---|
| Symbol | dctM |
|---|
| ID | 5135713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1632105 |
|---|
| End bp | 1633466 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640532975 |
|---|
| Product | C4-dicarboxylate transport protein |
|---|
| Protein accession | YP_001217460 |
|---|
| Protein GI | 147674787 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTTG CACTGTTATT TATTCTGGTT ATCGGCATGA TGATTGTTGG CGTGCCGATT
GCTATCTCGC TGGGCTTATC CAGTATTTTG TTCCTATTGT GGCACTCGGA TGCCTCTTTA
GCTTCGGTTG CACAAACCCT GTTTAACGCG TTTGCTGGCC ACTACACTTT ATTGGCGATC
CCGTTTTTTA TTCTCGCCTC AACGTTTATG TCTACTGGCG GTGTGGCTAA ACGAATCATC
CGTTTTGCGA TTGCTATGGT TGGCTGGTTC CGCGGCGGTT TAGCGATTGC TTCTGTGGTC
GCCTGTATGA TGTTTGCGGC GCTCTCGGGC TCATCTCCGG CAACGGTGGT TGCCATCGGC
AGTATCGTGA TTGCGGGCAT GGTCAAAAAC GGCTACAGCA AAGAGTTTGC GGCGGGGGTG
ATTTGTAACG CAGGAACCTT GGGTATTTTG ATCCCCCCTT CGATTGTGAT GGTGGTGTAC
TCAGCGGCGA CCAACGTTTC GGTTGGCCGC ATGTTCTTAG GTGGTGTTGT CCCAGGCTTA
TTGGCTGGTC TAATGTTGAT CATCGCGATT TACATTACCG CGCGGATAAA AAATCTACCC
AAGCAGCCCT TTGTTGGCTG GAAAGAAGCG CTGAAAGCAG CCAAAGAGGC AAGCTGGGGC
TTATTGTTGG TGGTGATTAT TCTCGGTGGG ATCTACGGTG GGATCTTTAC CCCAACAGAA
GCGGCAGCAG TGGCGGCGGT GTACTCCTTT TTTATCGCCA ACTTCATCTA TCGTGACATG
GGGCCGTTTG CGGATAAGAC CAATACCAAA CCGGTACTAG TCAAAGTAGT GGAAACCTTT
GTCCACAAAG ACACCAAAGC GACCTTGTAT GATGCAGGTA AGCTGACCAT CATGCTGATG
TTCATCATTG CTAACGCGCT TATCTTAAAA CATGTACTCA CCGAAGAGCG CATCCCGCAG
ATGATCACTG AATCCATGCT GTCTGCTGGG CTTGGGCCAA TTACCTTCTT GATTGTCGTG
AACCTGATCT TGTTGGTGGG TGGTCAGTTT ATGGAGCCAT CGGGTCTTCT GGTTATCGTC
GCTCCCTTGG TATTCCCGAT TGCGATTGCA TTGGGCATCG ACCCTATCCA TCTCGGCATC
ATGATGGTAG TGAACATGGA GATTGGCATG ATCACGCCGC CCGTCGGCTT AAACCTGTTT
GTGACCTCTG GGGTAGCCAA GATGTCGATG ATGAATGTGG TTAAAGCTGC ACTGCCTTGG
GTGGGCGTCA TGTTCCTCTT CCTCATTATT GTCACTTATG TGCCTTGGGT ATCCACTTGG
TTACCGACAC TCTTGATGGG GCCGGAAATC ATCACTCGCT AG
|
|---|
| Protein sequence | MAVALLFILV IGMMIVGVPI AISLGLSSIL FLLWHSDASL ASVAQTLFNA FAGHYTLLAI
PFFILASTFM STGGVAKRII RFAIAMVGWF RGGLAIASVV ACMMFAALSG SSPATVVAIG
SIVIAGMVKN GYSKEFAAGV ICNAGTLGIL IPPSIVMVVY SAATNVSVGR MFLGGVVPGL
LAGLMLIIAI YITARIKNLP KQPFVGWKEA LKAAKEASWG LLLVVIILGG IYGGIFTPTE
AAAVAAVYSF FIANFIYRDM GPFADKTNTK PVLVKVVETF VHKDTKATLY DAGKLTIMLM
FIIANALILK HVLTEERIPQ MITESMLSAG LGPITFLIVV NLILLVGGQF MEPSGLLVIV
APLVFPIAIA LGIDPIHLGI MMVVNMEIGM ITPPVGLNLF VTSGVAKMSM MNVVKAALPW
VGVMFLFLII VTYVPWVSTW LPTLLMGPEI ITR
|
|---|
| |