| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1413 |
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| Symbol | |
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| ID | 5135651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1510304 |
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| End bp | 1512067 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640532871 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | YP_001217356 |
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| Protein GI | 147674581 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATGCAAC TTCAACAGCT TAGCCATGTT AATTGGCTGG TGAACTCTTG GCAGCGTAGT
GAACAGGCGG GGTTGACCCA GCAGAGTCGT GCGCAAGATA TTCGCTTGAG TGACAACAAA
CTTAAGGAGC GTCGCCAAGA GCTCGCGGGG CTGATTGACA CGGTCAGCCG ATTTGCACTA
CCGCTGTTCT ACCAACTGTT TGCACACAGT GACAGCCGTT TAATTTTGAC CGACCAACAC
GGCGTGATCA TCGGCAGTTG GGGGCAAGCG AGATTTCGTG AAAAACTGAG CCAAATCGCG
CTAAGCTCCG GCGCATGTTG GCAAGAGCCG ATCAAAGGTA CCAACGCTAT TGGCACGGCT
TTGATTGAGC AAAAACCCAT TTCGGTGATT GGTGAGCAGC ACTTTATTCA GCATCATCAC
TTTATCAGTT GTTCCGCGAG CCCGATTTTT GATTACACCG GACAGCTGAT CGGAGTGTTA
GACATCACCA GCGAGCAGCA GAAACACACG CTTTCAACCC AAGTTGTGGT GCAGAATATG
GTACAACTGG TTGAAAATCA GCTCCTTAAC CAGATACCAC ATGGCCATGT ACGAATCGAT
CTCGCCTGTG AACCCTCGTT ACTGAGCAGT GGCTGGCAAG GCGTAATTAT TGCGGATGAA
TCGGGCCAGA TATTGGCGCA TAACCAAGTC GCAGGTCAGT TATTAGCGCA AGGCAGAGTG
ATTGGTCAAT CGGTGGAGCA GGTGCTGCCA CGGCCACAGA CGCATGCATC ATTTATCTAT
ACCACCACAC CGCTCCACTC CAAACAACAT CGTACCCGCG CGTTAACCCC CGCCAGTGAT
CTGCATTTTG GGGATGCGGA GGTGGAGCGC TGTTGGCAAC AGGCTAATCG GGTAATTGAT
AAAGATATCC GCTTGCTGAT CCTTGGCCAA ACTGGGGTGG GTAAAAATGA ATTTGTTAAA
GCGCTGCACA AAAATAGCCA GCGTAAAAAT GGTCCTTTAG TCGCGGTAAA TTGTGGTGCG
CTGGCCAAGG AGCTGGTGGA GGCGGAGCTG TTTGGCTATG TCGCTGGCGC CTTTACCGGA
GCCAGTCATA AAGGTTACCA AGGGAAAGTG CGTTTAGCCG ACAAAGGCAT TTTGTTTCTG
GATGAAATCG CTGATTTACC TCTAGATGCG CAAAGTCGCT TACTGCATGT GTTGCAAGAC
AAAACCGTGC TGCCGGTGGG TTCTAATCAC GCCACCAAAG TCGACATTCA GATTATTGCT
GCGACTCACA AAAACCTTGA ACAGTTGGTC ACACAAGGGC TGTTTCGCCA AGATCTCTAC
TACCGACTCA GTGATTTGGT TGTCGAGCTG CCCAGCTTCC AGCAGCGTCA AGATAGACAA
GCCCTAATCC ACCATATTCA TCGCCGCTAC AGTGATGCTG GCCAACAAAT CTGTGGTGAC
TTGATGCAAA GGCTACTCGC TTATCACTGG CCGGGTAATT TACGCGAGCT AGATAGCCTA
ATCAAAGTCG CGAGTTTGAT GGCCGAAGGC GAGGGGGTAC TCACTTTCAA TCATCTGCCG
ACACATCTTG CCCAAAAACT CAGCCACGCG GCGCCTACCG CTACGGAGGA TGATCAACAG
AAAGACATCA AATCCACGGT AGAAGCATCC TTACTCAAGA CCTACCAAGC AACGCAAGGC
AACATTAGCC AAACCTCGCG TTTGCTTGGG CTGAGCAGAA ATACCATCTA TCGCAAATTG
AAAGCGCTGG GGATACTGAA GTAA
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| Protein sequence | MMQLQQLSHV NWLVNSWQRS EQAGLTQQSR AQDIRLSDNK LKERRQELAG LIDTVSRFAL
PLFYQLFAHS DSRLILTDQH GVIIGSWGQA RFREKLSQIA LSSGACWQEP IKGTNAIGTA
LIEQKPISVI GEQHFIQHHH FISCSASPIF DYTGQLIGVL DITSEQQKHT LSTQVVVQNM
VQLVENQLLN QIPHGHVRID LACEPSLLSS GWQGVIIADE SGQILAHNQV AGQLLAQGRV
IGQSVEQVLP RPQTHASFIY TTTPLHSKQH RTRALTPASD LHFGDAEVER CWQQANRVID
KDIRLLILGQ TGVGKNEFVK ALHKNSQRKN GPLVAVNCGA LAKELVEAEL FGYVAGAFTG
ASHKGYQGKV RLADKGILFL DEIADLPLDA QSRLLHVLQD KTVLPVGSNH ATKVDIQIIA
ATHKNLEQLV TQGLFRQDLY YRLSDLVVEL PSFQQRQDRQ ALIHHIHRRY SDAGQQICGD
LMQRLLAYHW PGNLRELDSL IKVASLMAEG EGVLTFNHLP THLAQKLSHA APTATEDDQQ
KDIKSTVEAS LLKTYQATQG NISQTSRLLG LSRNTIYRKL KALGILK
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