Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1377 |
Symbol | dctP-1 |
ID | 5137567 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1482096 |
End bp | 1483061 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640532835 |
Product | C4-dicarboxylate-binding periplasmic protein |
Protein accession | YP_001217320 |
Protein GI | 147673037 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACCA TTAATAAGAT TACTATCGCA ATACTTACTT TGAGTGCTGC TGCTTCTGTC AATGCTGCGA CGACTTTAAA GATGGGGATG CAAGCTTCTG TGGGGTCTGT AGAGTATAAC TCGGCAAAAA TGCTTGCCGA CACATTAGAA GAAATGAGTC AAGGAGAGAT CAAACTCGCT TTGTACCCAA GCGCCCAGCT TGGTGATGAT CGTGCCATGC TTCAGCAATT GACGCTGGGA GATCTCGATA TAACTTATGC TGAGTTTGGT CGTATGGGGC TTTGGATACC GCGAGCAGAA GCGGTCATGC TCCCTTATGT CGCGAAAGAT TTTGACCATT TACGCCGCAT GTTTGAATCT GACTTTGGTC AAGGTGTTCG TGATGAAATG CTCCAGAAGT TCAACTGGCG TGCTTTGGAC ACTTGGTATA ACGGTACCCG TGAAACCACT TCAAACCGTC CCCTCAATTC GATTGAAGAT TTTAAAGGGT TAAAACTTCG AGTCCCGAAT GCTAAGCAAA ACCTCAACTA TGCAAAGCTG TCTGGTGCCT CGCCAACCCC GATGTCATTC TCTGAAGTTT ATTTAGCGCT GCAGACCAAT GCCGTAGATG GGCAAGAAAA CCCGCTACCA ACAATTAAAA CAATGAAGTT CTATGAAGTG CAAAAGAACT TAGCCATGAC ACATCATATT GTTAACGATC AAATGGTGAT CATTTCGGAA TCTACTTGGC AGAAGCTTTC TGATACGGAT AAAGACATCA TTCAGAAAGC CGTGCAGAAA GTGGGAGATG CTCATACACA GACCGTTAAA ACTCAAGAGG CAGAATTGGT CTCCTTCTTC AAGAGTGAAG GTATCAACGT GACTTACCCA GATCTGGAGC CATTCCGAGA AGCGATGCAA CCACTTTACA AGGAGTTTGA CAGTAACATC GGTCAGCCGA TTGTGTCGAA ATTGGCAGCA ATGTAA
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Protein sequence | MKTINKITIA ILTLSAAASV NAATTLKMGM QASVGSVEYN SAKMLADTLE EMSQGEIKLA LYPSAQLGDD RAMLQQLTLG DLDITYAEFG RMGLWIPRAE AVMLPYVAKD FDHLRRMFES DFGQGVRDEM LQKFNWRALD TWYNGTRETT SNRPLNSIED FKGLKLRVPN AKQNLNYAKL SGASPTPMSF SEVYLALQTN AVDGQENPLP TIKTMKFYEV QKNLAMTHHI VNDQMVIISE STWQKLSDTD KDIIQKAVQK VGDAHTQTVK TQEAELVSFF KSEGINVTYP DLEPFREAMQ PLYKEFDSNI GQPIVSKLAA M
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