| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1355 |
|---|
| Symbol | |
|---|
| ID | 5136323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1445543 |
|---|
| End bp | 1448593 |
|---|
| Gene Length | 3051 bp |
|---|
| Protein Length | 1016 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640532813 |
|---|
| Product | AcrB/AcrD/AcrF family transporter |
|---|
| Protein accession | YP_001217299 |
|---|
| Protein GI | 147673314 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000701931 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATTG CACGTTATAC CCTTGCCAAA CGCACCAGCG TTTGGGTGCT GATAGCCCTA
ACCTTGATTG GCGGCTACAT CAGCTACCTC AAATTGGGTC GTTTTGAAGA CCCTGAGTTT
GTGATTCGCC AAGCGGTGAT TGTGACGCCT TATCCGGGTG CCACCGCGCA AGAAGTTTCC
GATGAAGTGA CCGATGTCAT CGAAGGTGCG GTGCAAGCGC TGCAAGAGCT AAAAGAAGTC
AAATCGGTTT CGATGCAAGG CCGCTCTGAA GTGACGGTAG AAATCAAACT CGAATTTGCC
AAATCCTCCG CGCAGTTGCA GCAGGTATGG GACAAATTAC GCCGTAAAGT CGCGGATGCG
CAGCGCCAAC TGCCTCCCGG TGCCGGCGCT TCAATCGTTA ACGATGACTT CTCTGACGTG
TACGCGCTGT TTTATGCGGT AACTGGGGAA GGCTTTAGCG ACAAACAGCT CCAAGACTAC
GTCGATACGC TACGCCGTGA ACTGGTTCTG GTGCCGGGTG TGGCCAAAGC CGCTACGCTG
GCCGAGCAGC AAGAAGCAAT CTTTATCGAG ATGTCCAGCG AACGCATGGC GGAATTTGGC
CTTTCGGTTG AACGCGTATT GCAAGTGCTA CAAAAGCAGA GCCTAGTCAC CGTTGCAGGC
AGCGTCGATG CTCAGCAGAT GCGCATTCCG GTGATCCCTA AATCCAACAT CAGCTCCTTG
GCTGACCTGA CTAATTTGCA AGTGGCGGTC GGTAGCAACA ATGCGGTGGT ACGCCTAGGT
GATATTGCCA ACATCAGCCG TGGCTACACC GAGCCAGCAT CGATGCTGAT GCGCTATAAC
GGTCAGCGTG CAATTGGCTT TGGTATCTCG AATGTCACCG GCGGTAACGT GGTCGAGATG
GGCGATGCCG TCAAAGCACG CTTGGCTGAA CTTGAAAGCC AGCGTCCACT GGGCATGGAT
CTGCATGTGA TTTCGATGCA GTCTGACTCG GTGCGCGCTT CGGTGGCCAA TTTTATCGAT
AACCTGATTG CCGCTGTCGC CATCGTGTTT GTCGTGCTCT TGCTGTTTAT GGGCGTACGC
TCAGGTGTCA TCATCGGTTT TGTTCTATTG CTTACCGTTG CCGGTACCTT ATGTGTGATG
CTGATTGATG ACATCGCCAT GCAGCGGATT TCGCTCGGCG CGCTCATCAT CGCCCTCGGC
ATGTTGGTGG ATAACGCGAT TGTGGTTACC GATGGCGTAC TCGTGCGGTT TCAGCAAGAG
CCGAACGCCG ATAAACAGCA AGTGGTCTCT GAGGTGGTCA ATGCCACAAA ATGGCCACTG
CTGGGCGGTA CGGTGGTGGG CATTTTTGCC TTCAGCGCAA TTGGCCTCTC CCCTTCCGAT
ATGGGCGAAT ATGCTGGCTC ACTGTTTTGG GTGATCCTCT ACTCGATGTT TTTGAGTTGG
GTGTTTGCGG TGACCGTCAC CCCCATGCTG TGCCATGACT TTCTACGCGT TAAAGCTCCC
ACCAAAGAGG CGAAACCGTC TAAATTGGTG ACGGGTTATA AAGCCGTACT GCAATGGGTG
TTAAGCCACC GCGTGGTCAG CTGTGCGATG CTGCTCGGCA CCTTAGTAGC TGCGGTGTGG
GGCGCTCAGT TTATTCCGCC GGGCTTTATG CCAGAGTCGC AACGACCACA ATTTGTGGTG
GATGTGTACT TGCCACAAGG CTCGGATATT CGCCGCACCG AACAGGTTGT CGCCAGCATT
GAGAAAGACG TGACGCAAAA AGACGGTATT ACCAATATCA CCAGTTTCAT CGGCGGTGGT
GGCCTGCGTT TTATGCTGAC CTACTCACCC GAGGCGCGTA ACCCAAGTTA CGGCCAACTG
CTGATTGATA TTGATGACTA CACCAAAATT GCCCCATTAG TAGGCGAGTT GCAAAATGAG
CTGGATGCCA AATACCCTGA TGCCTCAATC AAGGTGTGGA AGTTTATGCT CGGTCGCGGC
GGCGGCAAGA AAATTGAAGC CGGTTTCAAA GGCCCAGACA GCCACGTGCT ACGCCAATTG
GCCGAACAAG CCAAAGCAAT TATGCATAAC GACCCGAACT TGATTGCGGT GCAAGATGAC
TGGCGTCAAC AAGTGCCGGT ATTGCAACCC GTGTATTCCG CACAAGAAGC ACAGCGCCTT
GGCTTAACCA CGCAAGAAAT CAGCGCCGCG ATCGCGCAAA CGCTCAATGG CCGTAATGTT
GGGGTGTATC GCGAAGGCAA TGACTTGATC CCGTTGATGG TTCGCGCACC AGAAAATGAA
CGCCACCACG AACGTGCGAT TGAAAACAGT GAAGTGTTCA GCGCGCAAGC TGGCCGTTAC
ATTCCGGTGA GCCAACTGGT GGATTCGGTC GATACTGTCT ATCAAGATGC CTTACTGCGC
CGTATTAACC GCATGCCGAC CATCTTGGTA CAAGCTGACC CAGCGCCGGG TGTGATGACG
GCCGATGCGT TCAATAATGT GCGCGAAAAA ATCGAGCAGA TTGAGCTACC AGCTGGCTAT
GAGCTGATTT GGTACGGTGA ATACAAAGCC TCGAAAGACG CCAATGAAGG TTTGGCGCTC
TCCGCTCCTT ATGGCTTTGC GGCGATGATT CTCGCGGTGG TGTTTATGTT TAACGCGCTG
CGTCAGCCAC TCGTGATCTG GATGACCGCA CCCTTTGCCG TTGTGGGTGT CACCATTGGC
CTTATCGCCT TTCAAACTCC GTTCGAGTTT ATGGCGATCC TCGGCTTTTT AAGCTTGATT
GGTATGATGG TGAAAAACGC GATTGTGTTG GTTGACCAAG CGGATGCGGA AATTCGAGCA
GGTAAAGAAG CTTACTTCGC GATCATTGAT GCGGCGGTGA GCCGTGCACG CCCGGTTCTG
CTCGGCGCAT TCACCACGAT TTTAGGGGTA GCGCCTCTGC TGGTAGACCC ATTCTTTAAG
AGTATGGCGG TCACCATTAT GTTTGGTTTG CTGTTTGCTA CCATTCTGAC CTTAGTCGTG
ATCCCGCTCT TCTATGCCGT GCTGTTTAGA GTGAAAGTCG CCAAAGCATA A
|
|---|
| Protein sequence | MDIARYTLAK RTSVWVLIAL TLIGGYISYL KLGRFEDPEF VIRQAVIVTP YPGATAQEVS
DEVTDVIEGA VQALQELKEV KSVSMQGRSE VTVEIKLEFA KSSAQLQQVW DKLRRKVADA
QRQLPPGAGA SIVNDDFSDV YALFYAVTGE GFSDKQLQDY VDTLRRELVL VPGVAKAATL
AEQQEAIFIE MSSERMAEFG LSVERVLQVL QKQSLVTVAG SVDAQQMRIP VIPKSNISSL
ADLTNLQVAV GSNNAVVRLG DIANISRGYT EPASMLMRYN GQRAIGFGIS NVTGGNVVEM
GDAVKARLAE LESQRPLGMD LHVISMQSDS VRASVANFID NLIAAVAIVF VVLLLFMGVR
SGVIIGFVLL LTVAGTLCVM LIDDIAMQRI SLGALIIALG MLVDNAIVVT DGVLVRFQQE
PNADKQQVVS EVVNATKWPL LGGTVVGIFA FSAIGLSPSD MGEYAGSLFW VILYSMFLSW
VFAVTVTPML CHDFLRVKAP TKEAKPSKLV TGYKAVLQWV LSHRVVSCAM LLGTLVAAVW
GAQFIPPGFM PESQRPQFVV DVYLPQGSDI RRTEQVVASI EKDVTQKDGI TNITSFIGGG
GLRFMLTYSP EARNPSYGQL LIDIDDYTKI APLVGELQNE LDAKYPDASI KVWKFMLGRG
GGKKIEAGFK GPDSHVLRQL AEQAKAIMHN DPNLIAVQDD WRQQVPVLQP VYSAQEAQRL
GLTTQEISAA IAQTLNGRNV GVYREGNDLI PLMVRAPENE RHHERAIENS EVFSAQAGRY
IPVSQLVDSV DTVYQDALLR RINRMPTILV QADPAPGVMT ADAFNNVREK IEQIELPAGY
ELIWYGEYKA SKDANEGLAL SAPYGFAAMI LAVVFMFNAL RQPLVIWMTA PFAVVGVTIG
LIAFQTPFEF MAILGFLSLI GMMVKNAIVL VDQADAEIRA GKEAYFAIID AAVSRARPVL
LGAFTTILGV APLLVDPFFK SMAVTIMFGL LFATILTLVV IPLFYAVLFR VKVAKA
|
|---|
| |