Gene VC0395_A1325 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1325 
Symbol 
ID5135298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp1414002 
End bp1414589 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content45% 
IMG OID640532783 
Producthypothetical protein 
Protein accessionYP_001217269 
Protein GI147675500 
COG category[K] Transcription 
COG ID[COG3070] Regulator of competence-specific genes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0134682 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAAAC CAGTATTAAA AGATTCAATG CGGCTCTTTG AGCAGCTAGG ACGTGTTAAA 
TCTCGTTCAA TGTTTGGTGG CTTTGGTATT TTCGTCGACG AAACTATGTT TGCGCTTGTG 
GTTAACGATA CGCTGCACAT CCGTGCAGAT GACGCCACAA TCGAAAAGTA TAAACAGCAA 
GGTTATGAAC CTTATGTTTA CAAAAAACGT GGCTTCCCCG TTGTAACTAA GTACTACGCT 
CTACCTGAAG ATTGTTGGAG TCATCCAGAC TCTATCCTCA ATGAAGCGCG TGCAGCACTG 
GAGGTCGCTA AGGCCGAACG TGAAACTCAA GCACAAGCGA AACCTGATCG TTTGAAAGAT 
CTTCCTAACT TGCGTTTAGC AACAGAAAGA ATGCTCAAAA AAGCAGGTAT CGACACCGTC 
GAGTCTCTTC AGACTCTTGG TTCTGTCGAA GCTTATAAAG CGGTTCAACG AACTCACACG 
GCAGAGGTGA GTTTAGAGTT GCTATGGGCT CTAGAAGGCG CAATCGAAGG TAAACATTGG 
TCGGTGATCC CACAAAATCG TCGTGATGAG CTATTAAGGC ATCTCTGA
 
Protein sequence
MDKPVLKDSM RLFEQLGRVK SRSMFGGFGI FVDETMFALV VNDTLHIRAD DATIEKYKQQ 
GYEPYVYKKR GFPVVTKYYA LPEDCWSHPD SILNEARAAL EVAKAERETQ AQAKPDRLKD 
LPNLRLATER MLKKAGIDTV ESLQTLGSVE AYKAVQRTHT AEVSLELLWA LEGAIEGKHW 
SVIPQNRRDE LLRHL