Gene VC0395_A1288 details

Gene Information

• Locus tag: VC0395_A1288
• Symbol: sapD
• ID: 5137534
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 1369713
• End bp: 1370708
• Gene Length: 996 bp
• Protein Length: 331 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640532746
• Product: peptide ABC transporter, ATP-binding protein
• Protein accession: YP_001217232
• Protein GI: 147674310
• COG category: [V] Defense mechanisms
• COG ID: [COG4170] ABC-type antimicrobial peptide transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 52
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGTTAC TTGATATTCG TCACTTGACG ATTGAGATTG ATACTCCACA AGGCCTTGTG 
AAAGCGGTTG ATCGTATGAG CTTGACCATG AATGAAGGGG AAATTCGTGG CTTAGTGGGT 
GAATCAGGCT CAGGTAAGAG CTTGGTTGCG AAAGCGATTG TCGGTATCTG TAAAGAAAAC 
TGGCGCGTCA CGGCTGACCG TATGCGTCTT GGCAATATTG ATTTGTTGCA GCTCACCCCG 
CGTGAACGCA GACGCGTGAT CGCACGCGAT GTGGCAATGA TTTTCCAAGA GCCTTCCACC 
TGTCTTGATC CATCTGAAGA GGTTGGACGA CAACTGATTG AGTCCATCCC ATTTCACACC 
TTCGAAGGAC GCTGGTGGGA GCGTTTCACA TGGCGGAAAA AGCAGGCGAT TGCTTTGCTG 
CACAAAGTCG GCATCAAAGA TCACAAAGAC ATCATGTCTA GCTACCCTTA TGAGCTGACG 
GATGGCGAGT GTCAGAAAGT GATGATTGCG ATGGCCATTG CCGCTAAACC GAAATTGCTG 
ATCGCAGATG AACCCACCAA CGACGTGGAC CCCATCACTC AATCGCAAAT TTTGCGTTTG 
CTGAGTCGCA TGAATCAGGT TAATAACACC TCGATCCTGC TCATCGGCCA TGACTTAACC 
ACCATTACTC AGTGGGCGGA TCGCATTACC GTCATGTATT GCGGGCAATC GGTGGAATCT 
GCGGAAACTG CAAAAATTGT GGCAGAGCCA AAGCACCCGT ACACCGCAGC GCTGCTGAAA 
GCCATGCCAG ATTTTAGTGA CTGGATCCCG CACAAACAGA AATTACAATC TCTCCCCGGC 
TCAATTCCGC CACTGCAACA CTTACCGATT GGCTGCCGCT TAGGGCCACG TTGCCCTTAC 
GCTCAGCGTC AGTGTGTTGA AGTCCCTCAT TCACGCTGGG TAAAAAACCA TAAATTTTCT 
TGCCATTTCC CGCTCAACAT GGAGTCGCCA CAATGA 

 

Protein sequence

MPLLDIRHLT IEIDTPQGLV KAVDRMSLTM NEGEIRGLVG ESGSGKSLVA KAIVGICKEN 
WRVTADRMRL GNIDLLQLTP RERRRVIARD VAMIFQEPST CLDPSEEVGR QLIESIPFHT 
FEGRWWERFT WRKKQAIALL HKVGIKDHKD IMSSYPYELT DGECQKVMIA MAIAAKPKLL 
IADEPTNDVD PITQSQILRL LSRMNQVNNT SILLIGHDLT TITQWADRIT VMYCGQSVES 
AETAKIVAEP KHPYTAALLK AMPDFSDWIP HKQKLQSLPG SIPPLQHLPI GCRLGPRCPY 
AQRQCVEVPH SRWVKNHKFS CHFPLNMESP Q