Gene VC0395_A1249 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1249 
Symbol 
ID5136677 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1320807 
End bp1322597 
Gene Length1791 bp 
Protein Length596 aa 
Translation table11 
GC content47% 
IMG OID640532707 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001217193 
Protein GI147675407 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.000483868 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTCA ATCCAATTAT CCAGTTTGGA CCATACTCAA ATCAGTATAA TTTCATTAAC 
TTTTTACTTT TTGTCGGGGG ATGGATGATG GTATCCAATC AACATAACAA TGCTCATCGC
ACAATAATAG CGGGCACTAC AAACTCACTG CATAGCGTTG GCCTACGCTT GAAACTGATC
GTGGTGCTGA TCGTGGTTTC CATTCTTTTC TTGGGTTTCA AAGGCTTGAC AGGCATGCAA
AGTGCTTCAG ATTCGATTGA ATCGCTTTAT ACAAAAGGAA TGCAACATAC GATTCGTGCT
GGACGCATAT TGGATGAGTT AGGCAGCGCG CGCAGCCAAC TGCTGTTAGC TTTCCAGCAT
GACCCTTCCT CCAAATACGC GCTGATGCAT GATCATCCGA TCACAATGCA CGTCGAAGGT
ATCCAAACAT CGCTGACCAA TTTGCACCGT ATTGTGGATA ACGAAATATT GGCTACCGTA
TTGGATGTTC AAGAAAAAGC CGTGATCCAA ACCTTGAAAG AAAAGCTGGA TCAAGTCACT
CGTCAAGGAT TTGAACCCGC TCTCCAACAG CTCAAGGCTG AAAAATACGA TGCGGCTAAC
TTAATTCTGC TCCAAGTCAT TAACCCTCTT TATAACGAGA TCAAAAAAGC GGCGGAAGCC
TTTCTCGACA TTCAAACCCA AGAAGGAAAA AATAACTTTT CTGCCTCTCA ACACGAGATT
AACCAATTTA TCTGGATGGT CAGCTTACTG GGTGCTTTTG CCTTGATAGT GACTACCAGC
TTAGCACTAC TGATTGCTAA GCGAGTCAAT AATGCAGTGC ACCACTTAGC CAGTTCTGCC
ACCCATATTG CCGCTGGCGA TCTCACTCAA CGCATCCCCG TCACTGGGAA CGATGAATTT
TCGGATATTG CTAAATACGT CAACCGAATT GTAACGAGCT TTCAAGAAGT CATTAGCAGT
AATCGCCACT CAGTCTCTGC TTTAGCGACG GCTGCCGAGG AAAACGCGGC CGTTGCGATG
CAAACGAAGC AAAACATCGT CGAACAGCAG TCGCAAACAC AGCAAATTGC TGCCGCAATC
CATCAGTTCA CCGCCACCGT ACACGAAGTC GCGCAAAGTG CAGGCCTTGC TGCAGAAGCC
TCTGAAGAAG CAGAACAAGC CGCGATGCAG GGACGCAAGG TCGTTGAGGA AAATATTGCG
ATGATTGAAG GGCTATCCAA CGATTTACAA AAGATGCTTG CCGCCATGCA GTTACTTGCC
AAAGATTCAG AAGACATTGG CAGTGTTGTG GATGTGATTC AGAGTATTTC AGAGCAAACC
AATTTATTGG CGCTGAATGC TGCGATCGAA GCCGCTCGCG CGGGTGAACA AGGACGAGGA
TTTGCAGTCG TCGCCGATGA GGTCAGAACC TTAGCAAGCC GCACCCAAGA ATCGACGAAA
CAGATCCTAC AGACAGTGCA GCGCTTACAG CAGAGCAGTC GAGATTCGGC GAATTTAATT
GAACAAGGGG TTTCTGGAGC ATCAAAAGCC GTTGAAAAAG CACGTTTGGC AGGGACGGCG
CTGTCTCAAA TTACGGCTAA CGTCGATCGT ATCTCGACCA TGAACACGCA AATTGCGACA
GCGTCAGAGG AGCAAAGTGC GGTGACTGAG GAGATCAATA AAAACATCAT CACCATCAGC
GAAATCTCCA ACCAAACCGC GTTGGGAGCA CAACAAAGCT CTGAAGCAAC CTTGGAGCTG
GCAAGACTCG CCGAGAGCAT GCAACAGGAA GTCGCGCGTT ACAATGCCTG A
 
Protein sequence
MKFNPIIQFG PYSNQYNFIN FLLFVGGWMM VSNQHNNAHR TIIAGTTNSL HSVGLRLKLI 
VVLIVVSILF LGFKGLTGMQ SASDSIESLY TKGMQHTIRA GRILDELGSA RSQLLLAFQH
DPSSKYALMH DHPITMHVEG IQTSLTNLHR IVDNEILATV LDVQEKAVIQ TLKEKLDQVT
RQGFEPALQQ LKAEKYDAAN LILLQVINPL YNEIKKAAEA FLDIQTQEGK NNFSASQHEI
NQFIWMVSLL GAFALIVTTS LALLIAKRVN NAVHHLASSA THIAAGDLTQ RIPVTGNDEF
SDIAKYVNRI VTSFQEVISS NRHSVSALAT AAEENAAVAM QTKQNIVEQQ SQTQQIAAAI
HQFTATVHEV AQSAGLAAEA SEEAEQAAMQ GRKVVEENIA MIEGLSNDLQ KMLAAMQLLA
KDSEDIGSVV DVIQSISEQT NLLALNAAIE AARAGEQGRG FAVVADEVRT LASRTQESTK
QILQTVQRLQ QSSRDSANLI EQGVSGASKA VEKARLAGTA LSQITANVDR ISTMNTQIAT
ASEEQSAVTE EINKNIITIS EISNQTALGA QQSSEATLEL ARLAESMQQE VARYNA