| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1235 |
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| Symbol | |
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| ID | 5136564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1304987 |
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| End bp | 1307497 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640532693 |
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| Product | hypothetical protein |
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| Protein accession | YP_001217179 |
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| Protein GI | 147674224 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0042131 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAAAGT TGCGCAGCAC ATGGATGGCT GTATTCGTCT GCAAGGAGGA CAGCTGCATG
TTATGGCCCG TAGTTAAGGC GCTATTGGGT CATTATCGTC GCTATCCATT ACAGATTTGT
CTGGTCTGGC TTGGCTTGAC TCTCGGTGTC TCTCTATTGG TGGGCGTTAC AGCCATTAAC
CATCATGCCA GACAAAGTTA TGAGCATGGT GAGAAGCTAT TTTCTAATCC TTTACCCTAT
CGTATTCGCT CCAAGCATAT TGCTAATAAA ATTCCGCAAG GCTTATATAT TCAGTTACGT
CGTGACGGTT TTCAGCAGTG TGTTCCTTTC GATGATTACC GTTTTAGTAC CACATCAGGT
TTAGATCTGA TTTTACAAGG GATTGATCCC GTCGCTTTAC TCTCTATCGA CAACGGCAAA
CCCTTAGCTC AACAAAGTGG TTTGCAACTG ATGAACCCGC CATATCCGGT CATGGTGAGT
CAAGAGTTAG CCAAACTGCA AGATTGGCAA GAAGGGGACT ACATCGCGCT GACGGATGGT
TCTCAGCTTG GCCCGATTGT GATTGATAGA CATAACCAAG TCACGGGAAT GCGAGTAGTG
GCCGACCTAT CTTTGGTCCG TATGCTCAAA AAAGGCTCTG GATTGACGGT GATCGCGTGT
GCGGATATGC CACCGGCCAA GCTCGATAAA CTGAAAAAAA GCTTGCCCAA TGGCTTAACG
CTCACCCGAA GTACACGTTC AGAGTTGGAG TCTTTAACGC AAGCTTTCCA TCTCAACTTA
ACCGCGATGG GCATGTTGGC CTTTTTAGTC GGTATCTTTA TTTTCTATCA AGCGATGTCA
CTGTCTATGG TGCAGCGTCA GCCTTTGGTG GGCACGCTAA GACAAATTGG TGTTAATGGT
TGGCAACTGG CCAAAGCATT GCTGATTGAA CTGTTGGTAT TGGTATTGGT GAGTTGGGTA
TGCGGTAACG TCTTGGGTTT ACTGCTTGCC AATCAATTAA TTCCATCTGT CGCGAGCAGT
TTGGGTTATC TGTATAACGC CAATGTGGAC TTAGCGATTG GTTGGGATTG GTCATGGAGC
AGTTACAGTC TTTTGATGGC ACTATTGGCG GCCTTTGCTT CTTGTACATG GCCTTTGGTG
CGTTTGTTGC GTTCTCAACC CATTCGCTTA TCGGCACGCC TGTCATTGGT TCGCTTTGCG
GGGAAAGAGT TTAAGCTACA AGCGCTATTG GCCTGTGCTT TGTGTGTGGC GGCGGTCGCG
ATTTATCAAG CCCCGAAAAG TCAGCAATCA GGGTTTGCGA TTATTGGCTT AATGCTGCTG
AGCGTTGCGC TGTTTACTCC CTACATTATC TGGACGTTAT TCACCAGCTT TTCTTACACG
CTGCGCTGGG TCAAAGTGCG TTGGTTTTTT GCCGATGCCG CCGCGAGTAT GAGTTATCGT
GGTGTGGCCA CGATGGCATT TATGGTCGCT TTAGCGGCCA ATATTGGTGT TGAAACCATG
GTCGGCAGTT TCCGAGATAC CACAGATCGC TGGCTGAGCC AGCGCCTTGC GGCCGATATC
TACCTTTATC CGAGTAACAG TGTCGCTTCT CGTATGAGCC AATGGCTTGG CCAGCAACCT
GAAGTTGACG CGGTTTGGTG GCGTTGGGAA AAAGATTTCG CATCGCAACA CGGGCCAGTA
CAAATCGTCA GTACGGGCGC TTCGGATGGT GAGCTAGACT CATTAACCGT CAAACTGGGC
GTGCCTAATT ATTGGTACCA TTTGCATCAT GCGCGGGGGG TAATGATCAG TGAATCGATG
GCGTTGAAGC TCGGGATTCG TCCCGGTGAC CTGATCGATT TACCGGAGCC GATGGGCTCG
GGGTGGGCGG TTTTTGGGGT CTATTACGAT TACGGCAATC CTTATCATCA AGTGATGATG
TCCCATCAAA ACTGGATGAA AGCCTTTGCC GGCACTGGCA ACGTGGCCTT GGCGGTTGTG
CTCAAAGAAG GGCTCACCGG AGAAAGCGTC AAAAAACGCC TTGATACCAT TTTCAGGCTG
GATGCGGATC GTATCTTTGA TAACACCAAT ATTCATAGCC ATGCGATGCG GGTTTTTGAT
CGCACGTTTT CGATTGCGGG AACGCTGGGC AATATCACCT TATTTATCGC CGTCTGTGGC
ATTTTCTTCT CAACTCTAGC GGGAGAAACA TCGCGTTTAC GCCATATCTC TTTGTTGCGT
TGCCTTGGTG TGTCAGGTAA AGAGCTAGTG CTGATCGGCG GTATGCAGTT ATTTGTTTTC
GGCGCTATCT CTTTATTGAT TGCACTGCCC TTGGGATTAA CTTTGGCCAA ATTAGTGATT
GATGTGGTGA TCAAGCATTC GTTTGGATGG ACTATGCAGT TGCAAATGGT GCCGGGAGAG
TATGTGTACA CAGTGGTGTG GTCTATGATG GCTTTAATTT TGGCGGGCGC TTTGCCGATT
ATTCGCTTGG CAAGAAAATC ACCGATGAAA TCACTGCGAG AGGCTTTGTA A
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| Protein sequence | MKKLRSTWMA VFVCKEDSCM LWPVVKALLG HYRRYPLQIC LVWLGLTLGV SLLVGVTAIN
HHARQSYEHG EKLFSNPLPY RIRSKHIANK IPQGLYIQLR RDGFQQCVPF DDYRFSTTSG
LDLILQGIDP VALLSIDNGK PLAQQSGLQL MNPPYPVMVS QELAKLQDWQ EGDYIALTDG
SQLGPIVIDR HNQVTGMRVV ADLSLVRMLK KGSGLTVIAC ADMPPAKLDK LKKSLPNGLT
LTRSTRSELE SLTQAFHLNL TAMGMLAFLV GIFIFYQAMS LSMVQRQPLV GTLRQIGVNG
WQLAKALLIE LLVLVLVSWV CGNVLGLLLA NQLIPSVASS LGYLYNANVD LAIGWDWSWS
SYSLLMALLA AFASCTWPLV RLLRSQPIRL SARLSLVRFA GKEFKLQALL ACALCVAAVA
IYQAPKSQQS GFAIIGLMLL SVALFTPYII WTLFTSFSYT LRWVKVRWFF ADAAASMSYR
GVATMAFMVA LAANIGVETM VGSFRDTTDR WLSQRLAADI YLYPSNSVAS RMSQWLGQQP
EVDAVWWRWE KDFASQHGPV QIVSTGASDG ELDSLTVKLG VPNYWYHLHH ARGVMISESM
ALKLGIRPGD LIDLPEPMGS GWAVFGVYYD YGNPYHQVMM SHQNWMKAFA GTGNVALAVV
LKEGLTGESV KKRLDTIFRL DADRIFDNTN IHSHAMRVFD RTFSIAGTLG NITLFIAVCG
IFFSTLAGET SRLRHISLLR CLGVSGKELV LIGGMQLFVF GAISLLIALP LGLTLAKLVI
DVVIKHSFGW TMQLQMVPGE YVYTVVWSMM ALILAGALPI IRLARKSPMK SLREAL
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