| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1212 |
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| Symbol | |
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| ID | 5136134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1275510 |
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| End bp | 1276484 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640532670 |
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| Product | hypothetical protein |
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| Protein accession | YP_001217156 |
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| Protein GI | 147675362 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000214097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACGG TAAAAACGAC CTTAATGACG CTCACCGCTG TCGCTGTTGT TGGCTGGATT
GGCTATCGCT TTTATCAAGC CTATCAACCT GAACCAGTCA CACTGCAAGG CCAGATTGAG
TCTCAGCAGT ACAGCATCTC CTCTAAAGTG CCGGGGCGCA TTGACCAAGT TTTGGTGCGC
AAGGGCGATC AAGTGGAAAA AGGCCAACTG ATCTTCACTC TACTCAGCCC TGAAATTGAT
GCCAAGTTGG AACAAGCGAT CGCTGGCCAG AAAGCCGCGG GGGCACTGGC TCAAGAAGCA
GAAAATGGTG CGCGTGAACA GCAGATTCAG GCCGCCAAAG ATCAATGGCT CAAAGCCCAA
GCGGCAGCAG AACTGGCTGA AAAAACGTAT CTGCGCGTCA ATAACCTTTA CAACGATGGT
GTGGTTTCCG AACAAAAACG GGACGAAGCG CAAACCCAAT GGCAAGCCGC CAAATACACC
GAAAGTGCAG CGTTGCAGAT GTATCAATTA GCCAAAGAAG GTGCACGAGA AGAGACGAAA
CAAGCCGCGC TCGAAAAAGC ACGCATGGCT GCTGGTGCGG TGGCTGAAGT CGAGGCATAT
GCCGCCGATA CCAAGATTCA AAGTTGGTTT GATGGTGAAG TATCACAAGT GTTGATGCAC
AGTGGTGAGC TGGCTCCGCA AGGTTTCCCT GTCGTCACAG TGGTCGATAC GCAAGACACT
TGGGCAGTAT TTAACGTGCG TGAAGATCTG CTCAAACACT TTACCCAAGG TGCTCAGTTT
ACGGCTTATT TGCCAGCTCT GGATAAATCC ATCGAGTTTA AAGTCACTCA CGTCGCCGTG
ATGGGCGATT TCGCCACTTG GCGCTCAACC GATGCCACTC AAGGGTTTGA CCTACGTACG
TTTGAAGTGG AAGCACGTCC AGTCACGCCA ACCGAAGGCC TGCGTATGGG CATGAGCGTT
GTGGTTAAGT TATAA
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| Protein sequence | MKTVKTTLMT LTAVAVVGWI GYRFYQAYQP EPVTLQGQIE SQQYSISSKV PGRIDQVLVR
KGDQVEKGQL IFTLLSPEID AKLEQAIAGQ KAAGALAQEA ENGAREQQIQ AAKDQWLKAQ
AAAELAEKTY LRVNNLYNDG VVSEQKRDEA QTQWQAAKYT ESAALQMYQL AKEGAREETK
QAALEKARMA AGAVAEVEAY AADTKIQSWF DGEVSQVLMH SGELAPQGFP VVTVVDTQDT
WAVFNVREDL LKHFTQGAQF TAYLPALDKS IEFKVTHVAV MGDFATWRST DATQGFDLRT
FEVEARPVTP TEGLRMGMSV VVKL
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