Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1095 |
Symbol | rlmL |
ID | 5137583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 1146900 |
End bp | 1149026 |
Gene Length | 2127 bp |
Protein Length | 708 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640532553 |
Product | 23S rRNA m(2)G2445 methyltransferase |
Protein accession | YP_001217041 |
Protein GI | 147673350 |
COG category | [L] Replication, recombination and repair [R] General function prediction only |
COG ID | [COG0116] Predicted N6-adenine-specific DNA methylase [COG1092] Predicted SAM-dependent methyltransferases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0184189 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATCAGT ATCTAGCGGT GACGTCTAAC GGCCTTGAGA ATCTATTAGT TGAAGAATTA ACCCAACTGG GTATTAACGA TGCCAAACCC GTTCAGGCCG GGGTTAAATT TAAAGCAACC AATGAACAGA TCTATCGCTG CTGTCTATGG AGTCGTCTCG CATCAAGATT TGTTCGTATT GTGGCTGAAT TTAAGTGTCA GAATGACTTA GATCTCTATC TTTCAACAAC TTCAGTCAAC TGGGTCAACT ATTTCCACAG TTCTAAAAAG CTCGTTGTTG ATTTCAATGG CACGAACCGA GAAATTCGTA ATAGCCAATA CGGCGCGATG AAAGTCAAAG ACGCCATCGT AGATTGCTTC ACTAAGAAAA ATCTTCCGCG TCCGTCGATC AGCAAAGATC TTGCGGATCT TCATATCCAT GTCCGCTTAC ACAAAGAGAA TGCTCTGCTT GGTATCGATA TGGTGGGTTC AGGCTTGCAT GCTCGGGGCT ACCGAACTGA AGCAGGTAAA GCGCCATTAC GTGAAACATT AGCCGCCGCA ATCATTCTGC GCAGTGGTTG GGATGCCAGT AAACCGCTTC TCGATCCTAT GTGTGGCTCC GGTACCTTAC TGATTGAAGC GGCGATGATG GCTGCCAATA TTGCTCCAGG CTTACAACGT AAAAAGTGGG GCTTCGAAGC ATTAGAAGAT TTCGAACCAG AACTCTGGGC AAGTGTGAAA TCAGAAGCCA GCGTGCAAGG TAAACGTGGA GTCAAAAAGG TAGAAACTCA TTTCTACGGC GTAGATAACG ATAACCGCGT ATTGCAGACG GCTAAAGATA ACGCCCGCCG TGCCGGTGTA GAAGAGCTAA TCAGCTTTAC CTTGGGTGAT GCGGCAAAAG TAAAACGCCC AGAAAACTTC GCTGAAGGTA TTGTGATTTG TAACCCACCG TACGGTGAGC GTTTAGGCAC TCATCCCGGT TTGATCGCTC TTTACACTGC ATTTGGTGCA CAGCTTAAAG CTGAGTTTGG TGGTTGCCAC GCTTCTATTT TCTCGAGTTC TGACGAATTA CTCAGTTGTT TGCGCATGCG TGCGGACAAA CAGTTCAAGC TGAATAATGG TGCGTTACCA TGTCACCAAA AAAATTACAC CATAGCCATG CGAGAGCAAA ACAGCGTCAG CAATGAAGGT ACTCAAGAAA TCCTCATTGC CCCCGATTTT GCCAACCGTT TGAAGAAAAA CTTCAACAAG ATTGGCAAAT GGGCTAAGCG TGAGGGGCTC GATTGCTTCC GCCTCTATGA TGCGGATCTT CCCGAATACA ATGTGGCTAT TGATGTCTAC CAAGATCATC TCATGATCCA AGAATATGCA GCGCCAAAGG ATATTCCTGA AGAGAAAGCG AAGCGTCGTT TGACCGATAT TATTCGCGCA GCCATTCAAG TGTTGGATGT CGATGCGAAC AACGTCGTGC TCAAAGTTCG TGAAAGACAA AAAGGCACGT CGCAATACGA GAAACTCGGC CAGCAAGCAC AGACCATGCA AATTACCGAG TATGGCGTGA AGTTGATCGT CAACCTATAC GATTATCTCG ATACTGGCTT ATTCCTTGAC CACAAAATTA CTCGTCGTCG TTTAGGGCAA ATGGCACAAG GCAAAGATTT TCTCAATTTA TTTGCCTATA CCGGCTCTGC GACAGTACAT GCTGCTTGTG GCGGTGCAAA ATCGACGACG ACCGTCGATA TGTCGAAAAC TTATCTTGAA TGGGCCAAAG AGAACATGCA GTTAAACGGG CAGGTTGGGC GTCAGCACCA GTACGTTCAG GCCGACTGTC TACAGTGGCT CGCGAATGCC CAAAGCCAGT ACGATCTTAT CTTTATTGAT CCGCCAACGT TTTCTAACTC TAAACGTATG GAGCAGACTT TTGATGTGCA ACGTGACCAC GTCACGCTTA TGACCAATCT TAAACGGTTG CTGCGCCCAG AAGGGACGAT TGTTTTCTCT AATAACAAGC GCCATTTCAA GATGGATATG GAAGCGCTAC ACGCTTTGGG CCTCAACGCT CAAAATATCT CGCATCAAAC CTTACCGCTG GATTTTGAGC GAAATAAACA AATTCATAAC TGCTGGCTGA TCACCCATCA GAGTTAG
|
Protein sequence | MNQYLAVTSN GLENLLVEEL TQLGINDAKP VQAGVKFKAT NEQIYRCCLW SRLASRFVRI VAEFKCQNDL DLYLSTTSVN WVNYFHSSKK LVVDFNGTNR EIRNSQYGAM KVKDAIVDCF TKKNLPRPSI SKDLADLHIH VRLHKENALL GIDMVGSGLH ARGYRTEAGK APLRETLAAA IILRSGWDAS KPLLDPMCGS GTLLIEAAMM AANIAPGLQR KKWGFEALED FEPELWASVK SEASVQGKRG VKKVETHFYG VDNDNRVLQT AKDNARRAGV EELISFTLGD AAKVKRPENF AEGIVICNPP YGERLGTHPG LIALYTAFGA QLKAEFGGCH ASIFSSSDEL LSCLRMRADK QFKLNNGALP CHQKNYTIAM REQNSVSNEG TQEILIAPDF ANRLKKNFNK IGKWAKREGL DCFRLYDADL PEYNVAIDVY QDHLMIQEYA APKDIPEEKA KRRLTDIIRA AIQVLDVDAN NVVLKVRERQ KGTSQYEKLG QQAQTMQITE YGVKLIVNLY DYLDTGLFLD HKITRRRLGQ MAQGKDFLNL FAYTGSATVH AACGGAKSTT TVDMSKTYLE WAKENMQLNG QVGRQHQYVQ ADCLQWLANA QSQYDLIFID PPTFSNSKRM EQTFDVQRDH VTLMTNLKRL LRPEGTIVFS NNKRHFKMDM EALHALGLNA QNISHQTLPL DFERNKQIHN CWLITHQS
|
| |