Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1020 |
Symbol | |
ID | 5136171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 1060096 |
End bp | 1061550 |
Gene Length | 1455 bp |
Protein Length | 484 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640532478 |
Product | putative multidrug resistance protein |
Protein accession | YP_001216966 |
Protein GI | 147673563 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAAATA GCGTTCAAAC GGTAGGTTTG TTGCATAAAG CAGCGCCTTA TTTTACGGCT TCTCTATTGA GTGCTTTCGT TTTAACGGGT TGCTCAGTAC CCGATCATTA CCCTGATCTT GCGACGATGT GGGAAGCGAA TGAGCTTAGC TCGACAAACA CATTTTCTCA CCAAGCTGAA ATGGACTGGC CATCAGTGAA TTGGTGGCAA CGCTATCAAG ATGCACAATT AAACCATCTG ATTGAGGAAG CGTTGCAGCA CTCACCATCG TTAGAGATGG CAATGGCTCG GCTTAAAGGG GCACAAGGTT TTGCTCGTCA AGCAGGCGCA ATTCGATCAT TTGATCTCGG GTTAGCGGCA TCCGCCACGG AAAGTAAAGT CAGTGAACGT TATCAATCTG CTACGCCTCC CGATGGTTGG AATGACTATG GCACTCTAAC CTTGAATTTT CAGTATGACT TTGACTTTTG GGGAAAAAAT CGCGCAGCGG TTGTTGCGGC GACTTCCGAG CTTGCTGCCG CTGAGGCAGA GAGTGTGGCT GCGCGTTTGA TGATCAGCAC ATCGATTGCT AATGCTTATG CCGAATTAGC TCGTCTTTAT GCCAATCAAG AGACCGTGCA TGCCGCGCTA CAAGTGCGCA ACAAAACCGT TGAGCTTTTA GAAAAACGTT ATGCCAATGG CTTAGAAACG CTAGGTTCTG TCAGCCAAGC GAAAGCGGTT GCTGCGAGTG TGGAAGCGGA GTTGCTTGGT ATTCAAGAAT CGATCCAATT ACAGAAAAAT GCTTTGGCCG CTTTGGTGGG GCAAGGGCCT GATCGCGCTG CATCGATTGA AGAACCCCAT ATCACCTTGA CCTCTCGTTA TGGCTTGCCG TCGGAGGCTG GCGTTGGATT ACTGGGGCAT CGTGCTGATA TCACCGCTGC GCGTTGGCGG GCAGAAGCCG CAGCACAGCA AGTCGGTATT GCGCAAGCAC AATTCTATCC AGATGTCACT TTGTCAGCGT TTATTGGTTA TCAGGCATTT GGTCTGGATC ATTTGTTTGA TAGTGGTAAT GACGCAGGTG CAATTGGGCC TGCGATCTAC TTACCACTAT TTACGGGTGG GCGTTTAGAG GGGCAGTTGA CTTCGGCAGA AGCTCGTTAC CAAGAAGCGG TCGCTCAATA CAATGGCACG TTAGTGCAAG CCTTGCATGA AATCGCCGAT GTGGTGACCA GTAGCCAAGC TCTGCAAGCG CGAATTAATA AAACCGAACA AGCCGTACAG CAAGCTGAAC AAGCACTGCA TATCGCGACG AACCGTTATC AAGGCGGTTT AGCCACCTAT CTCGATGTTT TGGTAGCTGA AGAGTCTTTA CTCAATAACC AAAGAGCATT GGTCAATTTG CAGTCACGCG CTTTTAGTTT AGATCTTGCG CTGATCCATG CGCTAGGCGG CGGTTTTGAA ACAACAGAAT CTTAA
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Protein sequence | MKNSVQTVGL LHKAAPYFTA SLLSAFVLTG CSVPDHYPDL ATMWEANELS STNTFSHQAE MDWPSVNWWQ RYQDAQLNHL IEEALQHSPS LEMAMARLKG AQGFARQAGA IRSFDLGLAA SATESKVSER YQSATPPDGW NDYGTLTLNF QYDFDFWGKN RAAVVAATSE LAAAEAESVA ARLMISTSIA NAYAELARLY ANQETVHAAL QVRNKTVELL EKRYANGLET LGSVSQAKAV AASVEAELLG IQESIQLQKN ALAALVGQGP DRAASIEEPH ITLTSRYGLP SEAGVGLLGH RADITAARWR AEAAAQQVGI AQAQFYPDVT LSAFIGYQAF GLDHLFDSGN DAGAIGPAIY LPLFTGGRLE GQLTSAEARY QEAVAQYNGT LVQALHEIAD VVTSSQALQA RINKTEQAVQ QAEQALHIAT NRYQGGLATY LDVLVAEESL LNNQRALVNL QSRAFSLDLA LIHALGGGFE TTES
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