Gene VC0395_A1017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1017 
Symbol 
ID5137257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1056637 
End bp1057953 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content44% 
IMG OID640532475 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001216963 
Protein GI147675551 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATTTGGA AGCCATTTAT GCCATTTTGG AAAAAAGCTG CCGCCCAATC AGAGGTGGAA 
CAACACAATC ATGACAGCGA CATTGTCTCT GCACTTAAAA GGAACCTTGC GTATATCGAG
TTTGATCCGC AAGGCAAAAT TTTAGATGCA AACGCACTTT TTTTGAGCGC AATGGGGTAC
ACCAAAGAAG AAGTGATTGG TCAACATCAC AAAATTTTTT GTGATCCCGA GACTGTTAAC
TCCTTGGAAT ATGCACAATT TTGGAAAAGC CTAGCCCAAG GACAAGCGCA ACGAAAAATG
TTTCACCGAC TCAAGAAAGA TGGTTCGAGT ATCTGGATAG AGGCAACGTA TATGCCAGTA
CGTAATCGTG CGGGCGATGT ATATAAGGTG ACTAAAGTTG CCCATGATGT GACGAAATCC
AAAATTACGG CGGACAAGCA GGCTGCGGTA TTTCATGCTC TGGATCGTTC ATCAGCCATG
ATTCAGTTTA ATCCGGATGG AACCATCAAA GAGGCGAATG AGAACTTTCT CAAAGCCACG
GGTTATCGAC TGGAAGAGAT TGTTGGCAAA CATCACCGTA TGTTTTGTGA TGACCGTTTC
TATAAAGAAA ATCCAAACTT TTGGCGTGAG CTCGCAAGAG GGGAGTTTAA ATCCGGTTTA
TTCCATCGGC GCACTCGCCA CGGTCAAGAT CTTTGGTTAG AGGCGACGTA TAACCCGATT
TTTAATGATG CAGGTGTCGT GACTCAAGTT GTTAAATTTG CTTCAGATGT TACAGATCAA
GTGTTAAAAG CTCATGCAAC CAAAGAAGCG TCGCAAATGG CTCAGCAAAC GTCTGCAGAA
ACGGTTCGTG TGGCAGAGTC GGGGCGCGAG ATGATTGATG CTGCGGCAAC GATAGCGAGT
GGTATTACAG AGTCAATTGC GGGTGCAAAT GCATTGATGA CGGACCTCTC ATCTCAATCT
CAGAGAATCA CGCAAATAGT CACAACCATC AACAAAATTG CTGAGCAGAC CAATTTGTTA
GCTTTAAATG CCGCCATTGA GGCCGCTCGA GCAGGTGAAT ATGGACGTGG TTTTGCTGTA
GTGGCTGATG AGGTGCGCAG TTTAGCGTCG AATACCAGTC AAGCAACTAG CGAAATTGAC
AACATTGTTA AACGCAACAG CCAACTCACC GAACAGTCAG GGCAAACCAT GGAGCAGATC
CAAGCCAAAG TCACTGAATT CAATCATATG CTGCAACAAA CCCAGTCTTT GATTGAGCAA
ATTCAGCATG CAGCGGAAAA TGTACAAAAA ACGGTGAGTA ATATTGTGGA TGAATAA
 
Protein sequence
MIWKPFMPFW KKAAAQSEVE QHNHDSDIVS ALKRNLAYIE FDPQGKILDA NALFLSAMGY 
TKEEVIGQHH KIFCDPETVN SLEYAQFWKS LAQGQAQRKM FHRLKKDGSS IWIEATYMPV
RNRAGDVYKV TKVAHDVTKS KITADKQAAV FHALDRSSAM IQFNPDGTIK EANENFLKAT
GYRLEEIVGK HHRMFCDDRF YKENPNFWRE LARGEFKSGL FHRRTRHGQD LWLEATYNPI
FNDAGVVTQV VKFASDVTDQ VLKAHATKEA SQMAQQTSAE TVRVAESGRE MIDAAATIAS
GITESIAGAN ALMTDLSSQS QRITQIVTTI NKIAEQTNLL ALNAAIEAAR AGEYGRGFAV
VADEVRSLAS NTSQATSEID NIVKRNSQLT EQSGQTMEQI QAKVTEFNHM LQQTQSLIEQ
IQHAAENVQK TVSNIVDE