| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0965 |
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| Symbol | |
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| ID | 5137231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 995083 |
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| End bp | 999078 |
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| Gene Length | 3996 bp |
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| Protein Length | 1331 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640532423 |
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| Product | sensory box sensor histidine kinase/response regulator |
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| Protein accession | YP_001216911 |
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| Protein GI | 147674561 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTCGA TAAAAGCGAT GTTCGTACTA CTGTTTTGCA TGATGGCGAT ATTGGCGGTT
GCCATGTTTA AAGTGACTCG GCAAGTCGCA GATCTTAGGC TAGAGAGCCA TCAATACAGC
GAGCAGCTTT TTCACTTTTA TCGTCTATCT CAAGAGTTAA AACAAAGCTC AGACCACTTG
ACTAAGTTTG CCCGAGCGTA TGCTAGCACT GGCAATGAGC GATGGTTGCG TATGTTTAAC
CAAGTTTTGA ATGTCCGTAA TGGCAAACTG CCAGCACCAA GCAATAATGA TTACGAGTTT
TGGGATGTAG TTGTACTTAA CGATTCGAGT GAACTTACAC CAAACGCTAA TCAGCGCTAT
CCCACATTGA TTGAACGCAT TCGTCAATCC GGCATTGGGT CGGTCGAGTT TCTTGAATTA
CAAAATGCTT TATCGTTATC GGATCAGTTA GTTGCATTGG AGCGTGAAGC CTTCATGGCG
GTGAAGGGGT GGAAGAGAGA GTTTGCGGGG GAATACCGCT ACACCGGGGA ACCTGATCTT
AACTTTGCCC GTTCTTTGCT TTATAGCGAA AAGTATTTTC TCGAGAAAGC TAAAATTATG
GCTGCAATTG GATCTGCGCA CTCCAATATC GTAGGGCGTA TTGAATCTCA AGTGAGATCT
GCAGATAAGA AAGCGCAATA TTATGAGCGA GTTAACTCAG TTTTAGTCAG TTTGCTACTG
TTGGCCATCA TGGCGTCTTT TGTGCTGCTT TGGATTGTCT ACGTTGCTCC ATTAAGCATT
TTATTGAAAA CGGTGGTGAG GCAAGTCCGC AATGAAGATT ATGAATTTAC TCTGACTCAA
AAAGCGCATG GCGAATTACA ACGCTTTATC GATAGTTTGA ATGTGGTGTT TCACCATATT
GCCGAACAGC TCAGTTTTAA TACCTTGGTG AAAGACTTCA ACATCATCAT TCGCAACCAT
CCGACCACGG AAGCCTTGTG CAATCAGGTG ACACAGTTTT TACTGCACCA TTTTCCCGTT
GAACTGATAG GTCTTTATCT CTATCAAAAT GGCGTACTGA CGCGTATTGC CGGTGTTGGT
CAGTCGGAGT CTGCACAACG TGACTACAGT GATCCAACGA CAACGCATTG TAGTGTGCTT
CGTTCGGGCA AGCCTTATGC AATGAAGTCA CTCAATGGCA ACTTCCAAGT GGTTTCTACC
TCAGGAGTGA TTGCACTCAA TGAGGTGTAT TACCTACCTC TACAGGTCAA TAATCAGCCG
ATAGCGTTAC TGGAGTTAGG AACTGTAGGC ATGCTGACAA TGCAGCAATA CCATTGGTTA
TCGCAGATGC TTGACGATCT CTCTGTCGCG ATTCAACTTA GCCAAAATGC GGAGCAGCAA
CGTTTGGCAG AAAGAAAAGT GCTTGAACAA TCACAGCTCA ATCAAGAGAT CCTCGATGCT
ACACCCAACC CGATGTACTG CTTGAGTGCA GATGGTAAAT TCCTCACTGT CAATGCCAAG
TTCTTGGATC TCATGGGTTT ATACAATAAC GAAGTGATTG ATAAAGAGCC GCAAGAGATT
TTCCCCGCTG AGGTTGCAGA GCGCTTTGCT GCGGCGCACC AAGTGTTGAC TCAGCAACAA
AGTAGCCAAA ATTACGAAGT TTCTTTGGTC GATTACACGG GTGTTCAGCG TGAAATGCTG
GTTTACGAGG CGTCTTTTAG CGATCGTGCG GACAAGGTCA ATGGTATCGT CGGTATTTTG
TTGGATATGA CCGAACGCAA AGAGATGGAA GATGAACTCC GCAAAGCCAA AGAGGCGGCG
GACGCGATGA GTCAGGCCAA AGGTGACTTC TTAGCGAATA TGAGCCATGA AATCCGAACC
CCAATGAATG CAATTTTGGG TATGGCACAT CTGGCATTGA ATACCCCACT CGATACGACA
CAACGCAAAT ACGTGACTCG TATTAATGAA TCCGCCAAAA ACTTACTGGG CATCATCAAT
GACATTCTCG ACTTTTCCAA AATGGAGGCG GGTAAACTCA ATGTAGAACG GATCGATTTC
AATCTTGATG ATGTGCTGGA TAATGTGACG GCAGTCGTCT CATTGAAAGC CCAAGAGAAA
GGCATTGAGT TTTTGATGGA TATCGACCCG CACATCCCAC TAGGGCTGAT TGGCGATCCA
CTTAGGCTTG GTCAAGTGAT GGTCAATCTG TGTGGTAATG CGGTGAAGTT TACCTCACAA
GGCGAAATTG TACTGTCTGC ACGAGTGAGC CAATTGAATG AACAGCAAGT CACGCTGCGG
TTTGCCGTCA AAGATACAGG GATTGGCATT GCCCAAGACA AGCTGGACGA TTTGTTCGAT
GCTTTCTCGC AGGCAGATAA CAGCATTACG CGTCAATATG GGGGCACTGG GCTTGGGTTG
AGTATCAGTA AGCAATTGGT CGAGCTTATG GGGGGGCAAA TTACCGTTCA TAGTGAAGAA
GGTAAAGGTT CCACCTTTGA GTTTTCTGTG GTGTGTGGTC TGCAAGATGC CAAAATGCGT
GATATTTCCC AACCTGTGCA TGGCCTAGCG GATAAGCGAG TGTTAGTGGT GGATGATAAT
GATTCTGCTC GCCACATTCT CGACTCTTTA CTGACCGCTA TGCGTTTTAA CGTCGTGACG
GTGAGTAATG GGTTTGAGGC GCTGTCGGAA ATTCAACAGA AACCCTTTGA TATGTTGTTT
GTTGACTGGA ACATGCCTGG TATGAATGGC ATTGAGCTAC TGACGCGAGT GAAAACCCTC
GGCCTTCGTG GGCACATGAA GAGCTTTTTA GTCACGGCTT ATGGACGTGA AATTAACCTT
GAAGGCGAAA ACAGCAAGTT GGTTGACGCT TTAATTGTCA AACCGGTTAA TCCCTCGAAT
CTGCTGGATG CGATTGTGAC CAGTTATGGA ATTGAGCATG TACGCCATAA AACGAACGAA
GCGCATCACA ACAGCAGGCC GAATTTTGTC GGCCAGAGTC TGTTGCTCGT CGAAGATAAT
GAGGTGAACC AAGAAGTTGC GCTTGGCCTA CTCCAAGACA CGGGCCTTAA TGTCGTGGTC
GCCAATCATG GTCAAGAAGC GCTTGAGAGG TTAGAGCATG CCGATTTTGA TCTGGTGTTA
ATGGATATGC AGATGCCGGT CATGGATGGG ATCACCGCGA CTGAGCATAT TCGAGCCAAT
CCGCGGTGGC AGAGCTTACC CATCGTTGCT ATGACCGCTA ATGCGATGGC GATAGATATT
GAACGCTGCT TGCAAGCAGG CATGAATGAT CATCTTTCCA AACCGATTGA AGTGGATAAG
TTTTATCAGG TACTCAGGCA TTTTCTTCAG GTGAGTGATG AGCAGAGCTT TTCATCGCAT
TCCCCAAATA AACCCAGCGC ATCAAAACCT GCGATGAACA CTTTGTTGGA TCTGCCTCAG
CTGACGGGCG TTGATTTGGA ACAAGCCATC TTCCGGATTG GGGGTAATCA ACAACGCTAT
TTTGAAATTC TGCGTCACTT TATCGATAGC CAAGTTGATG AGCTGAACAG TGTAACAGGG
CTAATCGAAG CGCAAGACTG GAGCTCTGCG ACCCGAGTGG CTCATACTCT GAAAGGTTCT
GCCGCGAATT TAGGATTGGA AGCTTTAGCT CAGTTGGCGG CAGAGATGGA GCAGAGTCTA
GAGCAGCAAG TCCCACCTTC GTTTGAGCAG CTTCAACAAG CTCAAAGCTT GCTAACCCAA
GTCGATGATG AACTCTCTGC GTGGGAACAT CAGCATAAAG AGCCGCTATT GGCGGAGAAC
CTAGATTGGG GTTTGTGGTA TCAGCCGTTG CAACAGGCGA TCAATGATTA TGATGTCACC
GCATTAAGCC TGAGTAAGTC CATTCGCCAA GTTTCCCAGT GGGATTCGGC GCAGCAAGCC
GCCTTAATTT CTGCAATTGA AGATTTTGAT TTTGAGCAGG CAAAGGCGCT ATTAGCCACT
TATCCGCAGT TAAGCGGTGA GCGTTTAAAC CAGTAG
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| Protein sequence | MRSIKAMFVL LFCMMAILAV AMFKVTRQVA DLRLESHQYS EQLFHFYRLS QELKQSSDHL
TKFARAYAST GNERWLRMFN QVLNVRNGKL PAPSNNDYEF WDVVVLNDSS ELTPNANQRY
PTLIERIRQS GIGSVEFLEL QNALSLSDQL VALEREAFMA VKGWKREFAG EYRYTGEPDL
NFARSLLYSE KYFLEKAKIM AAIGSAHSNI VGRIESQVRS ADKKAQYYER VNSVLVSLLL
LAIMASFVLL WIVYVAPLSI LLKTVVRQVR NEDYEFTLTQ KAHGELQRFI DSLNVVFHHI
AEQLSFNTLV KDFNIIIRNH PTTEALCNQV TQFLLHHFPV ELIGLYLYQN GVLTRIAGVG
QSESAQRDYS DPTTTHCSVL RSGKPYAMKS LNGNFQVVST SGVIALNEVY YLPLQVNNQP
IALLELGTVG MLTMQQYHWL SQMLDDLSVA IQLSQNAEQQ RLAERKVLEQ SQLNQEILDA
TPNPMYCLSA DGKFLTVNAK FLDLMGLYNN EVIDKEPQEI FPAEVAERFA AAHQVLTQQQ
SSQNYEVSLV DYTGVQREML VYEASFSDRA DKVNGIVGIL LDMTERKEME DELRKAKEAA
DAMSQAKGDF LANMSHEIRT PMNAILGMAH LALNTPLDTT QRKYVTRINE SAKNLLGIIN
DILDFSKMEA GKLNVERIDF NLDDVLDNVT AVVSLKAQEK GIEFLMDIDP HIPLGLIGDP
LRLGQVMVNL CGNAVKFTSQ GEIVLSARVS QLNEQQVTLR FAVKDTGIGI AQDKLDDLFD
AFSQADNSIT RQYGGTGLGL SISKQLVELM GGQITVHSEE GKGSTFEFSV VCGLQDAKMR
DISQPVHGLA DKRVLVVDDN DSARHILDSL LTAMRFNVVT VSNGFEALSE IQQKPFDMLF
VDWNMPGMNG IELLTRVKTL GLRGHMKSFL VTAYGREINL EGENSKLVDA LIVKPVNPSN
LLDAIVTSYG IEHVRHKTNE AHHNSRPNFV GQSLLLVEDN EVNQEVALGL LQDTGLNVVV
ANHGQEALER LEHADFDLVL MDMQMPVMDG ITATEHIRAN PRWQSLPIVA MTANAMAIDI
ERCLQAGMND HLSKPIEVDK FYQVLRHFLQ VSDEQSFSSH SPNKPSASKP AMNTLLDLPQ
LTGVDLEQAI FRIGGNQQRY FEILRHFIDS QVDELNSVTG LIEAQDWSSA TRVAHTLKGS
AANLGLEALA QLAAEMEQSL EQQVPPSFEQ LQQAQSLLTQ VDDELSAWEH QHKEPLLAEN
LDWGLWYQPL QQAINDYDVT ALSLSKSIRQ VSQWDSAQQA ALISAIEDFD FEQAKALLAT
YPQLSGERLN Q
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