Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0952 |
Symbol | prpB |
ID | 5135508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 978192 |
End bp | 979088 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640532410 |
Product | 2-methylisocitrate lyase |
Protein accession | YP_001216898 |
Protein GI | 147673607 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2513] PEP phosphonomutase and related enzymes |
TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 44 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTTAA GTCCTGGCGC CAAATTCAGG CTGGCAGTGA AAACCCATCA TCCACTGCAA ATCGTCGGCA CCATCAACCC TTACTGCGCC ATGATGGCGA AAAGTATCGG CCATCAAGCG ATTTATCTCT CTGGCGGTGG CATTGCCAAT GCCTCGTACG GCTTGCCAGA TTTGGGCATC ACCACACTCA ATGACGTGTT GGTAGATGTG GAACGCATCA CCAACGCCTG CGATTTGCCT TTGCTGGTGG ATATTGATAC CGGCTTTGGC GGCGCATTTA ACATTGCACG CACCATCAAA GCGATGGAGA AAGCCGGAGC CGCGGCGGTA CACATGGAAG ATCAGGTGGC GCAAAAACGC TGTGGTCATC GTCCGAATAA AGCGATTGTT AGCCAGCAAG AGATGGTGGA TCGCGTCAAA GCCGCAGTGG ATGCGCGCAT CAATCCTGAG TTTGTGATCA TGGCGCGCAC CGATGCCTTA GCGGTAGAAG GTATGGATAG CGCGATTGAA CGAGCGATCG CCTGTGTGGA AGCGGGCGCG GACATGATTT TCCCTGAAGC CATGACCGAG CTGAAACAGT ACGAACAGTT CTCAACGGCA CTGCGCAGTG CTACCGGTAA ACCTGTGCCG ATTTTAGCCA ACATTACCGA GTTTGGTCAG ACACCCCTTT ACAGCGGTGA GCAATTGGCG GCGGTGAATG TGGATATGGT GCTGTACCCA CTCAGCGCTT TCCGAGCCAT GAATAAGGCG GCGGAAAATG TGTATCGCCA CTTGCTGGAA CACGGGAATC AGGAAGCGTT GCTCGATCAA ATGCAAACGC GCAAAGAACT TTACGCTTAC CTGCATTACC ACGAATACGA AGACAAGCTG GATCAGCTGT TTTCACAACC CTCTTAA
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Protein sequence | MSLSPGAKFR LAVKTHHPLQ IVGTINPYCA MMAKSIGHQA IYLSGGGIAN ASYGLPDLGI TTLNDVLVDV ERITNACDLP LLVDIDTGFG GAFNIARTIK AMEKAGAAAV HMEDQVAQKR CGHRPNKAIV SQQEMVDRVK AAVDARINPE FVIMARTDAL AVEGMDSAIE RAIACVEAGA DMIFPEAMTE LKQYEQFSTA LRSATGKPVP ILANITEFGQ TPLYSGEQLA AVNVDMVLYP LSAFRAMNKA AENVYRHLLE HGNQEALLDQ MQTRKELYAY LHYHEYEDKL DQLFSQPS
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