| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0907 |
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| Symbol | mdoD |
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| ID | 5135468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 923029 |
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| End bp | 924666 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640532365 |
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| Product | glucan biosynthesis protein D |
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| Protein accession | YP_001216853 |
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| Protein GI | 147675383 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000000201606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCGTG TGTCCAGCGC CGTGCAACGT CATGCGCAAA AACTGATTGT ACTTTTCTCC
CTGCTGTTTG GGGCTTCTTT GCTGATGTCT GATAATGGTT TTGCTACAGA CATTAAAAAT
ACTAATGCCT CTTCTCCAGT GAATTCAGAG TCTACTAAGC CAACAAAAGC TGGCGAAGTT
AAAAATGTGG TTCGCTTTGC CAAAACGGGA TCGTTTGATA ACGACACCGT TGTTCGCCTA
GCTCGCCAAC TGGCGAAAAA GCCTTATGTT GCCTTAAAAG ATCCGCTACC AGAGAGTTTG
GCCAATATCA GTTATGATGA GTACCGCGAT ATTCGTTTTA AACCCGACAG TGCAGTGTGG
AAAGCAGATG GCCTACCATA TCAAATGCAA CTATTCCATC GCGGTTTCTT CTTCCAAGAT
CTGATTGAAA TTGCACTTGT TGAAGGCAAC CAAGCCACTC ACCTAAGTTA CGACCCCAAT
ATGTTCACCG CTGGCGAAGT TCTACAACAG AACCTGCCGA CTGAAGATAT TGGTTATAGT
GGTCTTCGTG TGCATTACCC TCTCAACAGC CCATCCTATT TTGATGAACT GTTTGTATTC
CAAGGAGCAA GCTACTTCCG TGCTCTGGGT AAAGGCAATG CGTATGGCTT GTCTGCGCGT
GGCTTGGCCA TCAAAACTGC CGATCCAGCG GGTGAAGAGT TCCCTATTTT CCGTGCCTTC
TGGGTGGAAA AACCAAACTA CGACACCAAC TTGATTGTGG TCCATGCCCT ACTGGATAGC
CCAAGCGTGT CTGGTGCGTA TCGTTTCTCT ATTCGTCCAG GAGAAAATAC TCGTATGGAC
GTTGAGGCGG TACTCTTCCC ACGCGTGGAG TTAAGCAAAG TTGGTCTAGC TCCGGCAACC
AGTATGTTCA TGCATTCGCC AAATGGCCGT GAGAAGACCG ATGATTTCCG TCCTTCTGTG
CATGATTCTG ATGGTTTATT GATGATCAAC GGACGTGGTG AACGTTTGTG GCGTCCATTG
GCTAACCCTA GCACACTGCA AGTGAGCGCC TTTATGGACA ACTCACCGCA AGGCTTTGGT
TTGATGCAGC GTGAGCGCGA TTACGCCAAC TACCAAGATT TGGAAGCCCA TTACGAAAAA
CGTCCAAGTC TGTGGGTTGA ACCGGTCGGT AACTGGGGTC CTGGTGCTGT CGTGTTGACA
GAAATTCCAA CTCAATCAGA AATTCACGAC AACATTGTCG CCTTCTGGAA GCCAGCACAA
CCTCTTGCAG CAGGCAGTGA ATATCGTTTC TCTTATCACC TCAACTGGGG TGCGCAACCA
GAAGCGAATC CACAAGCGAT CACTGTAAGC CGTACTGCGA GTGGACGTGC CGATATTGCC
AAACCAACGC CAAAACGTTT GTTCGTGATT GATTACCAAG TCCAAGGTGC CAAGCCTGCA
CAGATGCCAG AACCGAAAGT GCGCAGCAAT GCTGGGGTAA TCAGTAACGT TGTACTGCGT
GATAACCCTG CCAATAATGG CTATCGCCTC TCATTTGAAT TTGATCCAGG CGAAGTGACG
CTGGCTGAAC TACGGGCAGA GCTCACTTTG CAAGAAGCGC GTCCTGTAGA AACTTGGTTG
TATCGTTGGA CCCTGTAG
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| Protein sequence | MIRVSSAVQR HAQKLIVLFS LLFGASLLMS DNGFATDIKN TNASSPVNSE STKPTKAGEV
KNVVRFAKTG SFDNDTVVRL ARQLAKKPYV ALKDPLPESL ANISYDEYRD IRFKPDSAVW
KADGLPYQMQ LFHRGFFFQD LIEIALVEGN QATHLSYDPN MFTAGEVLQQ NLPTEDIGYS
GLRVHYPLNS PSYFDELFVF QGASYFRALG KGNAYGLSAR GLAIKTADPA GEEFPIFRAF
WVEKPNYDTN LIVVHALLDS PSVSGAYRFS IRPGENTRMD VEAVLFPRVE LSKVGLAPAT
SMFMHSPNGR EKTDDFRPSV HDSDGLLMIN GRGERLWRPL ANPSTLQVSA FMDNSPQGFG
LMQRERDYAN YQDLEAHYEK RPSLWVEPVG NWGPGAVVLT EIPTQSEIHD NIVAFWKPAQ
PLAAGSEYRF SYHLNWGAQP EANPQAITVS RTASGRADIA KPTPKRLFVI DYQVQGAKPA
QMPEPKVRSN AGVISNVVLR DNPANNGYRL SFEFDPGEVT LAELRAELTL QEARPVETWL
YRWTL
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