Gene VC0395_A0898 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0898 
Symbol 
ID5137434 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp912058 
End bp913680 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content48% 
IMG OID640532356 
ProductBCCT family transporter 
Protein accessionYP_001216844 
Protein GI147673331 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID[TIGR00842] choline/carnitine/betaine transport 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCAGA GAGGATACAT GACAAAAGAA ATTGATAAGT ACAGTATCGA TAATACGGAC 
TACACCGTAG GCCAAGATAA TGTGCAGAAA TGGGGGTTTG ATGTGCACAA TCCCGTGTTT
GGGATCAGTG CAGGTTTGAT CGCTGCATTT TTACTACTGA CCGTACTCGT GGATGCCCAC
CAAGCTAAGA TTGGGCTTGA TACCGTAAAG CAGAGCATTA TTGCGAGCTT CGACTGGTTG
TTTATCTGGT CGGGTAACTT ATTCCTACTG TTTTGTGTCG GATTGGTCAT TTCACCGTTT
GGTAAAATTC GGTTAGGTGG ACAGGCCGCG AAAGCGGATC ACTCTTTTCT ATCTTGGTTA
GCGATGTTGT TTGCTGCAGG GATGGGGATT GGTTTGATGT TCTGGAGTGT CGCAGAACCC
GTGGCCTATT ATACGGGGTG GTATGAAACA CCACTGGGTG TAGAAGCCAA CACTCCTCAA
GCTGCGCAAC TGGCGATGGG AGCAACCATG TTCCACTGGG GACTTCACCC GTGGGCCATT
TATGGTGTTG TTGCTCTATC ATTGGCTTTT TTCTGCTACA ACAAAGGTTT ACCACTTTCA
ATGCGCTCGG TTTTTTATCC GTTACTGGGT GATCGCGCTT GGGGTTGGGC AGGGCATGTG
GTCGATATTC TTGCGGTATT AGCCACGCTG TTTGGTCTGG CAACGTCTCT CGGTCTTGGG
GCGCAGCAAG CGGCTTCAGG TATCCACCAT GTATTTGGTT TTGAATCGGG CATCGGGCTA
CAAATTGCTG TGATCTGTGT GGTGACAGGT TTAGCCACAT TGTCTGTGGT TCGAGGTATT
GATGGCGGGG TGAAAGTCAT CTCTAACATC AATATGATTG TCGCGTTTTT ATTGCTCGCA
CTGGTGGCTG TGATTGGTTA TAGCGTCACA TTGACTTCGA TTCCGACGAC TTTAATGGCT
TACCTACAAA ACCTAATCCC GCTGAGTAAT CCTCATGGTC GTGAAGATGA AGTGTGGTTC
CAAGGTTGGA CAGTCTTCTA CTGGGCATGG TGGATTTCAT GGTCGCCGTT CGTTGGCATG
TTCATCGCAC GTGTTTCTAA AGGACGTACC ATTCGTGAAT TCATTGTGGC GGTATTATTG
ATCCCAACGT TAGTGACACT GGTGTGGATG TCGGTATTTG GTGGTCTGGC CGTGGATCAA
GTGATTAATG AAATCGGCGT GTTAGGTCAA AATGGCTTAA CCGATGTTTC GCTAGCCATG
TTCCAGATGT TTGATTCGCT GGTTTTCGGT AAGGTGCTAT CTGTGATTGC CGTGGTGTTG
GTTTTGGTGT TTTTTATCAC GTCGTCAGAT TCGGGTTCAC TGGTCATTGA CAGTATTACC
TCAGGTGGCA AATTAGATTC ACCAGTATTG CAGCGTGTAT TTTGGGCAGT ACTCGAAGGC
GCAGTCGCGG TTGCACTGCT ATGGATTGGA GGCACGGAGG CGGTACAAGC GCTGCAAGCG
GGCGTTATCT CTACAGCCTT GCCATTTACG GTGATCTTGC TACTGATGTG CGTCAGCTTA
TGGAAAGGGT TAAAAACCGA ACCTGAGTTC ATGGCTTCCA GCAAGCGTCT CCACCAATCT
TAA
 
Protein sequence
MTQRGYMTKE IDKYSIDNTD YTVGQDNVQK WGFDVHNPVF GISAGLIAAF LLLTVLVDAH 
QAKIGLDTVK QSIIASFDWL FIWSGNLFLL FCVGLVISPF GKIRLGGQAA KADHSFLSWL
AMLFAAGMGI GLMFWSVAEP VAYYTGWYET PLGVEANTPQ AAQLAMGATM FHWGLHPWAI
YGVVALSLAF FCYNKGLPLS MRSVFYPLLG DRAWGWAGHV VDILAVLATL FGLATSLGLG
AQQAASGIHH VFGFESGIGL QIAVICVVTG LATLSVVRGI DGGVKVISNI NMIVAFLLLA
LVAVIGYSVT LTSIPTTLMA YLQNLIPLSN PHGREDEVWF QGWTVFYWAW WISWSPFVGM
FIARVSKGRT IREFIVAVLL IPTLVTLVWM SVFGGLAVDQ VINEIGVLGQ NGLTDVSLAM
FQMFDSLVFG KVLSVIAVVL VLVFFITSSD SGSLVIDSIT SGGKLDSPVL QRVFWAVLEG
AVAVALLWIG GTEAVQALQA GVISTALPFT VILLLMCVSL WKGLKTEPEF MASSKRLHQS