Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0898 |
Symbol | |
ID | 5137434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 912058 |
End bp | 913680 |
Gene Length | 1623 bp |
Protein Length | 540 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640532356 |
Product | BCCT family transporter |
Protein accession | YP_001216844 |
Protein GI | 147673331 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCAGA GAGGATACAT GACAAAAGAA ATTGATAAGT ACAGTATCGA TAATACGGAC TACACCGTAG GCCAAGATAA TGTGCAGAAA TGGGGGTTTG ATGTGCACAA TCCCGTGTTT GGGATCAGTG CAGGTTTGAT CGCTGCATTT TTACTACTGA CCGTACTCGT GGATGCCCAC CAAGCTAAGA TTGGGCTTGA TACCGTAAAG CAGAGCATTA TTGCGAGCTT CGACTGGTTG TTTATCTGGT CGGGTAACTT ATTCCTACTG TTTTGTGTCG GATTGGTCAT TTCACCGTTT GGTAAAATTC GGTTAGGTGG ACAGGCCGCG AAAGCGGATC ACTCTTTTCT ATCTTGGTTA GCGATGTTGT TTGCTGCAGG GATGGGGATT GGTTTGATGT TCTGGAGTGT CGCAGAACCC GTGGCCTATT ATACGGGGTG GTATGAAACA CCACTGGGTG TAGAAGCCAA CACTCCTCAA GCTGCGCAAC TGGCGATGGG AGCAACCATG TTCCACTGGG GACTTCACCC GTGGGCCATT TATGGTGTTG TTGCTCTATC ATTGGCTTTT TTCTGCTACA ACAAAGGTTT ACCACTTTCA ATGCGCTCGG TTTTTTATCC GTTACTGGGT GATCGCGCTT GGGGTTGGGC AGGGCATGTG GTCGATATTC TTGCGGTATT AGCCACGCTG TTTGGTCTGG CAACGTCTCT CGGTCTTGGG GCGCAGCAAG CGGCTTCAGG TATCCACCAT GTATTTGGTT TTGAATCGGG CATCGGGCTA CAAATTGCTG TGATCTGTGT GGTGACAGGT TTAGCCACAT TGTCTGTGGT TCGAGGTATT GATGGCGGGG TGAAAGTCAT CTCTAACATC AATATGATTG TCGCGTTTTT ATTGCTCGCA CTGGTGGCTG TGATTGGTTA TAGCGTCACA TTGACTTCGA TTCCGACGAC TTTAATGGCT TACCTACAAA ACCTAATCCC GCTGAGTAAT CCTCATGGTC GTGAAGATGA AGTGTGGTTC CAAGGTTGGA CAGTCTTCTA CTGGGCATGG TGGATTTCAT GGTCGCCGTT CGTTGGCATG TTCATCGCAC GTGTTTCTAA AGGACGTACC ATTCGTGAAT TCATTGTGGC GGTATTATTG ATCCCAACGT TAGTGACACT GGTGTGGATG TCGGTATTTG GTGGTCTGGC CGTGGATCAA GTGATTAATG AAATCGGCGT GTTAGGTCAA AATGGCTTAA CCGATGTTTC GCTAGCCATG TTCCAGATGT TTGATTCGCT GGTTTTCGGT AAGGTGCTAT CTGTGATTGC CGTGGTGTTG GTTTTGGTGT TTTTTATCAC GTCGTCAGAT TCGGGTTCAC TGGTCATTGA CAGTATTACC TCAGGTGGCA AATTAGATTC ACCAGTATTG CAGCGTGTAT TTTGGGCAGT ACTCGAAGGC GCAGTCGCGG TTGCACTGCT ATGGATTGGA GGCACGGAGG CGGTACAAGC GCTGCAAGCG GGCGTTATCT CTACAGCCTT GCCATTTACG GTGATCTTGC TACTGATGTG CGTCAGCTTA TGGAAAGGGT TAAAAACCGA ACCTGAGTTC ATGGCTTCCA GCAAGCGTCT CCACCAATCT TAA
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Protein sequence | MTQRGYMTKE IDKYSIDNTD YTVGQDNVQK WGFDVHNPVF GISAGLIAAF LLLTVLVDAH QAKIGLDTVK QSIIASFDWL FIWSGNLFLL FCVGLVISPF GKIRLGGQAA KADHSFLSWL AMLFAAGMGI GLMFWSVAEP VAYYTGWYET PLGVEANTPQ AAQLAMGATM FHWGLHPWAI YGVVALSLAF FCYNKGLPLS MRSVFYPLLG DRAWGWAGHV VDILAVLATL FGLATSLGLG AQQAASGIHH VFGFESGIGL QIAVICVVTG LATLSVVRGI DGGVKVISNI NMIVAFLLLA LVAVIGYSVT LTSIPTTLMA YLQNLIPLSN PHGREDEVWF QGWTVFYWAW WISWSPFVGM FIARVSKGRT IREFIVAVLL IPTLVTLVWM SVFGGLAVDQ VINEIGVLGQ NGLTDVSLAM FQMFDSLVFG KVLSVIAVVL VLVFFITSSD SGSLVIDSIT SGGKLDSPVL QRVFWAVLEG AVAVALLWIG GTEAVQALQA GVISTALPFT VILLLMCVSL WKGLKTEPEF MASSKRLHQS
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