| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0559 |
|---|
| Symbol | |
|---|
| ID | 5136125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 600161 |
|---|
| End bp | 600628 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640532017 |
|---|
| Product | phosphotyrosine protein phosphatase |
|---|
| Protein accession | YP_001216509 |
|---|
| Protein GI | 147674630 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0394] Protein-tyrosine-phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.00747923 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAGG TACTCGTGGT GTGCATGGGC AATATTTGCC GTTCTCCGAC CGCAGAAGCG
GTATTGCGTG CTAAGGCGGC ACAACTCAAG GTTGATGTGG AAGTCGATTC AGCAGGCACG
ATTGGGTATC ACCAAGGGAA TCCACCGGAT GCACGCTCAA AAGCGGCAGG AGAGAAGCGG
GGATACTCAT TTTCTGGCAT CAAAGCGCGA AAGATCCGCG ATGAAGATTT TGTGAAATTT
GATTGGATTT TAGCCGCAGA CCAAGAAAAT TTAGCTGAGC TGAAAGCTCG CTGCCCTCAA
TCCCATCAAC ATAAGCTGTC ATTGATGCTC AGCCACAGTG ACTCGGAATA CCAAGAAATT
CCGGACCCTT ACTATGGTGG TGAACGCGGT TTTGAGCTGG TGCTCGATTT GGTTGAAGAC
GCGGCAGAGC AGTTTTTACT GAAACTAAAA CAGCAAGGCC AGCATTAA
|
|---|
| Protein sequence | MQKVLVVCMG NICRSPTAEA VLRAKAAQLK VDVEVDSAGT IGYHQGNPPD ARSKAAGEKR
GYSFSGIKAR KIRDEDFVKF DWILAADQEN LAELKARCPQ SHQHKLSLML SHSDSEYQEI
PDPYYGGERG FELVLDLVED AAEQFLLKLK QQGQH
|
|---|
| |