Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0492 |
Symbol | ligA |
ID | 5137473 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 525975 |
End bp | 527984 |
Gene Length | 2010 bp |
Protein Length | 669 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640531950 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_001216443 |
Protein GI | 147675693 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000000242454 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGATG TCGCGCAACG ATTAACAGAA TTAAGAAAAA CCTTGCATGA GCATGGTGTC CGCTATTACG TAGAAGATGC CCCCACCATT CCGGATGCAG AATACGATCG CTTAATGCGC GAGCTGCTGG AATTGGAAGC GGCTCACCCG GAATTGATGA GCTCGGACTC GCCCAGTTTA CGAGTCGGAG GACGTCCGCT GGATGCTTTT GAATCTGTCG TGCATGAAAT TCCGATGTTA TCGCTCGATA ACGCCTTTGA TGATGGTGAA TTAGAAAGCT TTTATCGCCG TATGACGGAT CGGATCCAGG CGGTACAGCA TAGTGCCTTT TGTTGTGAGC CGAAACTGGA TGGCTTGGCG GTCAGTTTAC TATACGAAAA TGGTGTTCTG ACCCGCGCGG CGACTCGTGG TGATGGTATG ACCGGCGAAA ACATCACGGA AAATGTACGT ACCATTAAAG CAATCCCTTT ACGTCTGCAA GGCGCAGATT TTCCAACTCG CCTTGAAGTG CGCGGTGAAG TGTTTATGCC TAAAGCGGGG TTTGAAGCAC TTAACGCACG AGCATTGAAA AAAGGTGAAA AGCAGTTTGT TAACCCTCGT AATGCGGCGG CGGGAAGCCT ACGTCAACTC GACTCCAAAA TTACCGCCCA ACGTCCACTG GCTTTTTACG CTTATAGTGT TGGTGTTATT GAAGGCGGAG AGTTAGCGAC CAGCCACTAT CAACGATTTT TGCAACTAAA GGGCTGGGGG CTGCCGATTT GTCCTGAAAC CAAACTGGTA ACTTCTCTCG CCGAAGTCAA AGCTTTTTAT CAAGACATTT TGCAACGTCG TCAGTTTTTG GCTTATGAGA TTGATGGCGT CGTCATTAAA GTTGACGATA TCCAGTTGCA GGAGCGATTG GGGTTCGTTG CTAGAGCGCC GCGCTGGGCG ATTGCCTATA AATTTCCTGC GCAGGAAGAG CTTACTTTGC TCAATGATGT TGAATTTCAG GTAGGTCGTA CTGGCGCGAT TACCCCAGTT GCTAAGTTGG AGCCTGTTTT TGTCGGTGGT GTTACGGTAA GTAATGCCAC ATTACATAAT GCCGATGAGA TTGAGCGTTT GGGAGTGATG GTCGGAGATA CGGTGGTGAT CCGCCGTGCT GGGGATGTCA TCCCACAAAT CGTCTCTGTG GTATTAGAGC GACGCCCTGA GAATGCAAAA TCTATTGTAT TTCCTACTCG TTGCCCAGTT TGTCAATCGG ATGTTGAACG GGTTGAAGGA GAAGCGGTTG CTCGATGTTC CGGTGGACTG ATTTGCCAAG CTCAGCGCAA AGAGGCATTG AAGCATTTTG TTTCTCGCAA GGCCATGGAT GTAGAAGGCT TGGGCGATAA AGTGATTGAG CAACTGGTTG ACCGAGAAAT GGTGAGTACA CCTGCTGATT TATTCCGGTT AAGAGCGGGA GAGCTCACGA TTTTGGAGCG AATGGGCCCC AAATCGGCGC AGAATGTGAT TGATGCTCTC AATAAAGCGA AGCAAACCAC ATTACCTAAG TTTTTATATG CACTGGGTAT TCGTGAAGTC GGCGATGCTA CCGCACTCAA CTTGGCTCAG CACTTTTTAA GTTTGGAAGC GATTCAACAA GCGAGTTTAG AACAATTTAT CGAAGTTCCC GATGTCGGAG TGGTTGTTGC AAGCCATTTA CTGGCCTTCT TTGCGCAAGA CCGTAACCAA CAAGTGATCA ATGAATTGCT AGAACAAGGC ATCACATGGC CGGCGCTAAC GGCTGCGCCC GTGGCGGTAG ACTCTGCTCT AGCGGGCAAA ATTGTTGTGT TAACCGGCAG TTTTACTCAA TTGTCTCGTA ATGATGCGAA AGCCGCACTA CAAGCTTTAG GTGCTAAGGT GACGGGTAGC GTATCAAAAA ATACTGATAT TGTTTTTGCA GGAGAAGCAG CGGGCTCTAA GCTAGCCAAA GCGACCGAGT TGGGTATCCA AGTTTTCGAT GAGCAAGCAT TAATCGAATT TTTGAAATAA
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Protein sequence | MSDVAQRLTE LRKTLHEHGV RYYVEDAPTI PDAEYDRLMR ELLELEAAHP ELMSSDSPSL RVGGRPLDAF ESVVHEIPML SLDNAFDDGE LESFYRRMTD RIQAVQHSAF CCEPKLDGLA VSLLYENGVL TRAATRGDGM TGENITENVR TIKAIPLRLQ GADFPTRLEV RGEVFMPKAG FEALNARALK KGEKQFVNPR NAAAGSLRQL DSKITAQRPL AFYAYSVGVI EGGELATSHY QRFLQLKGWG LPICPETKLV TSLAEVKAFY QDILQRRQFL AYEIDGVVIK VDDIQLQERL GFVARAPRWA IAYKFPAQEE LTLLNDVEFQ VGRTGAITPV AKLEPVFVGG VTVSNATLHN ADEIERLGVM VGDTVVIRRA GDVIPQIVSV VLERRPENAK SIVFPTRCPV CQSDVERVEG EAVARCSGGL ICQAQRKEAL KHFVSRKAMD VEGLGDKVIE QLVDREMVST PADLFRLRAG ELTILERMGP KSAQNVIDAL NKAKQTTLPK FLYALGIREV GDATALNLAQ HFLSLEAIQQ ASLEQFIEVP DVGVVVASHL LAFFAQDRNQ QVINELLEQG ITWPALTAAP VAVDSALAGK IVVLTGSFTQ LSRNDAKAAL QALGAKVTGS VSKNTDIVFA GEAAGSKLAK ATELGIQVFD EQALIEFLK
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