Gene VC0395_A0468 details

Gene Information

• Locus tag: VC0395_A0468
• Symbol: lipB
• ID: 5136983
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 500486
• End bp: 501145
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640531926
• Product: lipoate-protein ligase B
• Protein accession: YP_001216419
• Protein GI: 147674188
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0321] Lipoate-protein ligase B
• TIGRFAM ID: [TIGR00214] lipoate-protein ligase B

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00000117999
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAATAA TGGAAAACCA GCTGTTGGTG AGACGCCTTG GCAGACAGGA CTACACTCCC 
GTTTGGCAGG CAATGCATCA ATTCACTGAT CAACGTGACT CCACAACGCG TGATGAAGTG 
TGGCTTGTCG AACACAACCC CGTGTTTACT CAAGGACAAG CCGGCAAAGC TGAGCACCTC 
CTCAATACTG GAGATATTCC TGTTGTACAA AGTGATCGGG GTGGGCAAGT CACCTACCAC 
GGACCGGGGC AATTAGTCGC CTATTTTCTG ATTGACCTAC GCCGTAAAAA GCTCGGCGTC 
CGTGAATTAG TGACACACAT TGAAAATTTG GTTATTCACA CCTTAAAACA TTATCAAATT 
GAGTCAGCCG CACGACCCGA TGCCCCCGGA GTTTACGTAC AAAATAGAAA AATCTGCTCT 
TTAGGTTTGC GTATCCGTAA GGGATGCTCT TTCCACGGAC TCGCACTCAA TATTCAGATG 
GATCTTGCTC CATTTTTACG TATTAACCCT TGTGGGTATG CTGGAATGGA GATGATTCAA 
TTGAGTGACC TGCATCCGGT CAGCATGGAA CAGGTTGAAA AAGTATTAAT CCAAGAACTC 
GTTACTCTAC TGGACTACGA GCAAGTCGAA TTCAGCACAG AAGCATACAA TCATGAGTAA 

 

Protein sequence

MTIMENQLLV RRLGRQDYTP VWQAMHQFTD QRDSTTRDEV WLVEHNPVFT QGQAGKAEHL 
LNTGDIPVVQ SDRGGQVTYH GPGQLVAYFL IDLRRKKLGV RELVTHIENL VIHTLKHYQI 
ESAARPDAPG VYVQNRKICS LGLRIRKGCS FHGLALNIQM DLAPFLRINP CGYAGMEMIQ 
LSDLHPVSME QVEKVLIQEL VTLLDYEQVE FSTEAYNHE