Gene VC0395_A0456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0456 
Symbol 
ID5136196 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp487394 
End bp488710 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content45% 
IMG OID640531914 
Producthypothetical protein 
Protein accessionYP_001216407 
Protein GI147675069 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3307] Lipid A core - O-antigen ligase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTTCGT TTCACAAAAC TCTATTTTTC GCTTTTTTAC TGTTTGTTTT CTGGTTACCA 
ATCCCTCTTG GCAGTAATCG TCCTTGGGCA TGGTCGCTCA ATGAAATTTA CGTAGCCTTC
TTATTATTAG GCTGTTTGTT TCTGCTCCCC GCAGCACAGT GTTGGCTAGC TATACAACGA
GCGAAAGTCA TTCTCATCCC AGTGGCGCTT TTTACTCTAT GGTCTTGGAT GCAAAGTTGG
CCAAGTTTGG GGCTATCATC CGATCAAACT TTGGTGTTTA TCTCTGCCGT TAAATCCTTA
CATTACCTAC AAATCTGCTT GGTTGCCGCG TTATTGGTCG ATACCCCTCA TAAGCTCAAA
ATGCTGGCGA CCACTATGAT CGCAAGTGGT ATCTGTCAGG CCTTCTATGC TGGCGTAATC
CTGCTGCTCG AATTGCAAAC CTCACCGTTT TTTTCCTTAC CGTTAAACCA ACGAGCCTCG
GGAAGTTTTG TCTATCATAA CCATTTAGCC AATTTTCTAA TGCTCAATCT CTGTCTTGGT
TTTGGTTTGT TGATTGCTGA GCTCAATCAC CAAACAACAC AAGGTTGGAG AAACACCCTA
AAAAAATTAT TGGCGATACT CCTCTCTGAC AAAGCATTTA TTCGTCTGGG CTTGGTCATT
ATGGTGATCG CTCTAGTACT CACCCGCTCA AGAATGGGCA ATATCGCCTT TTTTGTCGCA
CTCAGTATCG GAAGCTTGCT CATCCTTCTC TTCTATAAAT CGAAGCCGAA AAGCCTCTAT
CTGTTGATCG TGAGCTTATT TATTGTGGAT GCTTTGGTTG TCAGTAACTG GTTTGGCTTA
GATAAGGTTC GCCAACGTTT AGCTGAAACC AGTTTGCAAA ATGAATCGCG GGATGATGTG
GTTCGTGATG CCTTGAACGC CATTCAAGAA CGTCCCCTTA CCGGTTTTGG CAATGGCACG
TTTTACTCCA CTTTCCCCTC TTACAATCAA GGCGAAGTGG CGCTTTTTTA TGACCATGCA
CACAACGATT ATGTGCAGTT CACCTTGGAG TCAGGCCTGA TTGCCACCAG CGTATTTGGC
ATCATGGTTT TGTTTTGTGC ATGGCGGGCT TTGTCAGCCT TTCGCAATCG AACCAATAAA
ACTATGCGTG GCATTGGCCT TGGCAGTTTA ATGGCGATCA TCGGGATGCT GTTACACATG
AGTGTGGATT TTCCACTGCA AGCCCCAGCC ACGGCGCTCT ACTTTCTATT TTGTCTATTA
ATCGCCAATT GGAGCATGAC GCTTCCTACC CCGAAATACC GCTCATCCAG AACCTGA
 
Protein sequence
MLSFHKTLFF AFLLFVFWLP IPLGSNRPWA WSLNEIYVAF LLLGCLFLLP AAQCWLAIQR 
AKVILIPVAL FTLWSWMQSW PSLGLSSDQT LVFISAVKSL HYLQICLVAA LLVDTPHKLK
MLATTMIASG ICQAFYAGVI LLLELQTSPF FSLPLNQRAS GSFVYHNHLA NFLMLNLCLG
FGLLIAELNH QTTQGWRNTL KKLLAILLSD KAFIRLGLVI MVIALVLTRS RMGNIAFFVA
LSIGSLLILL FYKSKPKSLY LLIVSLFIVD ALVVSNWFGL DKVRQRLAET SLQNESRDDV
VRDALNAIQE RPLTGFGNGT FYSTFPSYNQ GEVALFYDHA HNDYVQFTLE SGLIATSVFG
IMVLFCAWRA LSAFRNRTNK TMRGIGLGSL MAIIGMLLHM SVDFPLQAPA TALYFLFCLL
IANWSMTLPT PKYRSSRT