Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0240 |
Symbol | clpB-1 |
ID | 5137276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 250451 |
End bp | 253024 |
Gene Length | 2574 bp |
Protein Length | 857 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640531700 |
Product | clpB protein |
Protein accession | YP_001216203 |
Protein GI | 147675005 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00000492438 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTCTTG ACAGATTTAC GAGCAAATTT CAGATCGCGA TTTCCGATGC CCAGTCATTA GCGCTCGGCC GTGATCATCA ATATATCGAA CCTGTGCACC TGATGGTGGC TCTGCTGGAT CAAAACGGCA GCCCGATCCG CCCATTACTC ACCATGCTTA ATGTGGATGT GATGCAACTG CGCTCCAAAC TTGGCGAAAT GCTCGATCGT TTACCCAAAG TCAGTGGTAT TGGTGGTGAT GTACAGCTCT CTTCGGCGCT TGGCTCGCTG TTTAATCTGT GTGATAAGGT TGCGCAAAAG CGTCAAGATG CCTACATCTC CTCTGAAATT TATCTCCTCG CCGCTTTGGA AGATAAAGGT CCACTTGGAA CCTTGCTCAA AGAGTTCGGG CTGACCGAGA AAAAAGTCTC TGATGCAATT GAAAAAATTC GTGGAGGCCA GAAGGTCTAT GACCCGAATG CGGAAGAGCT GCGTCAAGCG TTGGAAAAAT TCACCATCGA TCTCACTGAA CGCGCTGAGC AGGGCAAACT CGATCCTGTG ATCGGTCGTG ATGATGAAAT TCGCCGCACC ATTCAAGTGC TGCAGCGTCG TACCAAAAAC AACCCAGTGA TCATCGGTGA ACCCGGTGTG GGTAAAACTG CGATTGTGGA AGGCTTGGCG CAGCGCATCA TTAATAATGA AGTACCAGAA GGCCTGCGTG GACGCCGCGT ATTGTCTTTA GATATGGGCG CGCTGGTGGC TGGGGCGAAA TACCGCGGCG AATTTGAAGA GCGCTTGAAA TCAGTACTCA ATGAGCTAGC GAAAGAAGAA GGCAATATCA TCCTCTTCAT TGATGAGCTG CACACCATGG TTGGTGCGGG GAAAGGCGAA GGCTCGATGG ATGCTGGCAA CATGCTCAAA CCCGCTTTGG CGCGTGGAGA ATTGCACTGT GTCGGCGCAA CCACTTTAGA TGAGTACCGC CAATACATCG AAAAAGATCC AGCGTTAGAG CGCCGCTTCC AAAAAGTGTT GGTGGATGAG CCCACGGTGG AAGATACCAT CGCCATCTTG CGTGGATTGA AAGAGCGTTA CGAACTGCAT CACCATGTCG AAATCACAGA TCCAGCGATT GTGGCGGCAG CGAGCCTATC GCATCGCTAT ATTTCCGATC GCCAGTTGCC TGATAAAGCG ATCGATTTGA TCGATGAAGC GGCTTCAAGC ATCCGGATGC AGATTGACTC CAAACCAGAA GCTCTGGATA AGCTTGAGCG CAAAATCATC CAACTGAAAA TCGAGCAGCA AGCGCTCTCT AATGAGCACG ATGAAGCCAG TGAAAAACGC TTGGCGATCT TAAATGAAGA GCTGCAAGAG AAAGAGCGTG ATTACGCGGA GTTGGAAGAA GTGTGGAAAG CTGAAAAGGC GGCACTCTCC GGCACGCAAC ATATTAAAGC GGCACTTGAA CAAGCGCGGA TGGATCTGGA AGTCGCTCGC CGTGCGGGGG ATTTGAACCG CATGTCAGAG CTGCAATATG GTCGCATTCC AGAGCTAGAA AAGCAGCTTG ATCTGGCTGC GCAAGCCGAA ATGCAGGAAA TGACTCTGCT ACGTAATAAA GTGACGGATG CAGAAATTGC CGAAGTGCTT TCAAAACAGA CTGGCATTCC AGTATCAAAA ATGCTCGAAG CCGAGAAAGA AAAGTTGCTT CGCATGGAAG AAGTGCTGCA TAAACGCGTG ATTGGTCAAA AAGAAGCGGT GGAAGTGGTC GCGAATGCGA TTCGCCGCAG TCGCGCAGGC CTTTCTGATC CAAATCGTCC GATTGGCTCC TTCTTATTCT TGGGGCCAAC AGGGGTCGGT AAAACCGAGC TGTGTAAAAC CTTGGCTAAC TTCCTGTTTG ACAGTGAAGA TGCCATGGTA CGTGTGGATA TGTCGGAATT TATGGAGAAA CACTCGGTTG CTCGTTTAGT CGGTGCGCCT CCAGGTTATG TCGGCTATGA AGAAGGTGGC TACTTAACGG AAGCGGTGCG CCGTAAACCT TACTCGGTGA TTTTGCTCGA TGAAGTGGAA AAGGCGCACC CAGATGTCTT CAATATTCTG CTGCAAGTCT TGGATGATGG CCGCTTGACG GACGGGCAAG GGCGCACGGT TGATTTTCGA AATACCGTGG TGATCATGAC CTCCAACTTG GGTTCAAGCC GTATCCAAGA AAATTTTGCA AGGTTGGATT ATCAAGGTAT CAAAGAACAA GTGATGGACG TAGTCAGCAA ACACTTCCGC CCTGAGTTCT TGAACCGAGT GGATGAAAGT GTGGTATTCC ATCCATTAGG ACAAGAGCAT ATTAAGTCTA TCGCCTCTAT TCAGTTGGCC CGCCTACGTC AACGTTTGGC AGAGCGAGAT TACCAACTAG AGGTTGATGA TGAGGCGCTG GATCTGATTG CTCATGTCGG CTTCGATCCG GTTTACGGTG CTCGTCCACT GAAACGCGCG ATTCAGCAAA ATGTGGAAAA CCCACTGGCC AAATCTATTC TGGCTGGTAA GTTCCTGCCT GGTTCACCTA TTTTACTATC GGTAAAAGAC GGGAATATTT TCGCAAGCCA GTAG
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Protein sequence | MRLDRFTSKF QIAISDAQSL ALGRDHQYIE PVHLMVALLD QNGSPIRPLL TMLNVDVMQL RSKLGEMLDR LPKVSGIGGD VQLSSALGSL FNLCDKVAQK RQDAYISSEI YLLAALEDKG PLGTLLKEFG LTEKKVSDAI EKIRGGQKVY DPNAEELRQA LEKFTIDLTE RAEQGKLDPV IGRDDEIRRT IQVLQRRTKN NPVIIGEPGV GKTAIVEGLA QRIINNEVPE GLRGRRVLSL DMGALVAGAK YRGEFEERLK SVLNELAKEE GNIILFIDEL HTMVGAGKGE GSMDAGNMLK PALARGELHC VGATTLDEYR QYIEKDPALE RRFQKVLVDE PTVEDTIAIL RGLKERYELH HHVEITDPAI VAAASLSHRY ISDRQLPDKA IDLIDEAASS IRMQIDSKPE ALDKLERKII QLKIEQQALS NEHDEASEKR LAILNEELQE KERDYAELEE VWKAEKAALS GTQHIKAALE QARMDLEVAR RAGDLNRMSE LQYGRIPELE KQLDLAAQAE MQEMTLLRNK VTDAEIAEVL SKQTGIPVSK MLEAEKEKLL RMEEVLHKRV IGQKEAVEVV ANAIRRSRAG LSDPNRPIGS FLFLGPTGVG KTELCKTLAN FLFDSEDAMV RVDMSEFMEK HSVARLVGAP PGYVGYEEGG YLTEAVRRKP YSVILLDEVE KAHPDVFNIL LQVLDDGRLT DGQGRTVDFR NTVVIMTSNL GSSRIQENFA RLDYQGIKEQ VMDVVSKHFR PEFLNRVDES VVFHPLGQEH IKSIASIQLA RLRQRLAERD YQLEVDDEAL DLIAHVGFDP VYGARPLKRA IQQNVENPLA KSILAGKFLP GSPILLSVKD GNIFASQ
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