Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0225 |
Symbol | |
ID | 5137043 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 232393 |
End bp | 234069 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640531685 |
Product | hypothetical protein |
Protein accession | YP_001216188 |
Protein GI | 147675427 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3275] Putative regulator of cell autolysis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 51 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCTCA TCCTCTCATT ACTGCAACAG ATGTGTGTTT ACCTTGTTCT CGCCTATATG TTGAGTAAAA CGCCGATCTT CATTCCTTTA CTTAACATTT CTGGTCGGTT TGACCACAAA ATCAGTGTTT ATGTTCTGTT TTCGCTGTTT TGCATTATGG GCACCTACTT TGGCCTGCAG ATCAATGATG CGATTGCCAA TACGCGTGCC ATCGGCGCTG TGATGGGAGG TCTGTTTGGT GGACCTGTGA TTGGTTTTGC GGTTGGCCTC ACCGGAGGCT TACACCGCTA TACCTTGGGG GGATTTACCG ATCTCGCCTG CGCGATTTCC ACCACCGCTG AAGGTTTAAT TGGCGGCTTG CTACACACCT ATTTGCTGCG CAAAGGCAAA GGGAAATTAC TGTTTAGCCC AAGTATTGTC TTTGCGGTCA CCTTATTTGC CGAAATTGTG CAGATGTTGA TCATCTTGGT CGTGGCGAAA CCGTTCGAAC AGTCTTATGC GCTGGTGTCC ACCATCGCCG CGCCAATGAT CATTGCTAAC TCAGTCGGTG CCGCACTGTT TATGAGCATC CTGCTCGATC GCAAAACCAT TTTTGAAGAG TATTCCGCGA CGTTTTCACG CCGCGCTCTG AATATTGCCG AGCGTTCTGT TGGTATCCTT GCTGCCGGTT TTAACCCAGA AAATGCCAAC AAAATTGCCC GAATCGTGTA TGAACAGACC AATGTCGGCG CGGTCTCGAT CACCGATCGC GAAAAAATCC TCGCCTTTGT CGGGATTGGC GATGATCACC ATAAACCGAA TACACCGATC AGCTCGCAGA GCACGCTCGA TGCGATTAAT CGCAACGCCA TCATCTATCT CGATGGCAAA GAGCATCCTT ATCAATGTTC TTTGTCTCCG ACCTGCAAAC TGGGGTCTGC GTTAATCATT CCGTTGCGAG CAGGCGATCG GGTGATCGGC ACCATCAAGC TCTACGAGCC AAAACGTAAG CTGTTTTCCA CCATCAATAT GTCGATGGCA CAGGGTATCG CCCAACTGCT ATCCAGCCAA ATTCTGTATG GCGAATATCA GCAAAAACAA ATCCTGCTCT CGCGGGCGGA AATCAAACTC CTGCAAGCGC AGGTTAATCC ACATTTTCTG TTTAACGCAC TCAACACCAT CAGTGCGGTG ATCCGCCGTG AGCCAGATAA AGCCCGCGAG CTGATTTTGC ATCTGTCGCA ATTTTTCCGC AGTAACCTCA AACAGAACGT CGAAACCGTC ACTTTGCGTG AAGAGCTTGC CCACGTGAAC GCTTATCTCA CTATTGAAAA AGCGCGTTTT AGTGACAGGC TCGATGTGGA AATTGCGATT GATGATGCCC TGCTAGAACG TAATGTCCCC AGCTTCACTT TGCAGCCTTT GGTGGAAAAT GCCATCAAAC ACGGCACCTC TAACCTACTC GAAGCTGGCA AAGTGCGCAT TTACAGTGAA ATGGTTGAAG GGGGAATGCG CGTCGTGGTG GAAGACAACG CCGGGCTCTA TCAGCCTCCG AGTGAAGATT ATGATGGTTT AGGGATGCAA ATTGTTGAAA AGCGCCTCAC CAACAAATTT GGTACAAAAT CAGGGCTACA GATTGAGGTC GCGCCACAAG AGTACACGCG AATGAGCTTT GTCATTCCAC AGCAAGGCAC TTACTAA
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Protein sequence | MDLILSLLQQ MCVYLVLAYM LSKTPIFIPL LNISGRFDHK ISVYVLFSLF CIMGTYFGLQ INDAIANTRA IGAVMGGLFG GPVIGFAVGL TGGLHRYTLG GFTDLACAIS TTAEGLIGGL LHTYLLRKGK GKLLFSPSIV FAVTLFAEIV QMLIILVVAK PFEQSYALVS TIAAPMIIAN SVGAALFMSI LLDRKTIFEE YSATFSRRAL NIAERSVGIL AAGFNPENAN KIARIVYEQT NVGAVSITDR EKILAFVGIG DDHHKPNTPI SSQSTLDAIN RNAIIYLDGK EHPYQCSLSP TCKLGSALII PLRAGDRVIG TIKLYEPKRK LFSTINMSMA QGIAQLLSSQ ILYGEYQQKQ ILLSRAEIKL LQAQVNPHFL FNALNTISAV IRREPDKARE LILHLSQFFR SNLKQNVETV TLREELAHVN AYLTIEKARF SDRLDVEIAI DDALLERNVP SFTLQPLVEN AIKHGTSNLL EAGKVRIYSE MVEGGMRVVV EDNAGLYQPP SEDYDGLGMQ IVEKRLTNKF GTKSGLQIEV APQEYTRMSF VIPQQGTY
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