| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0188 |
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| Symbol | |
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| ID | 5136581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 192404 |
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| End bp | 194461 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640531649 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_001216152 |
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| Protein GI | 147673612 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAAT TTCGCAAGAT TCATTCTTTG GCCTTTAAGC AAGCCAAAAG CGTGTTTTTA
GTCTCTGTAC TGTTGGGACT CTGTTTTAGT TTTTACCACA CCTTATCCGA TCTGCACCAA
GAGCAGAGCA AGGTGCAGGA GCACTATAAC TTTAAATTGG TGCAGAGTTA TGAAAACGCC
AGTCAGGCGG CTTACCATCT TAATAATCTA CTCGCCGAGC AAGTCGCCAC CACCTTGATG
CTCGACCCTG GCATCTTCAA AGTGGAGATT GTGGATGACT TTGGCGATGT GATGACACGT
AAAGAAAAAG CAATCAGTGA ACAGAGTCAA TTAGTCAGTG TACTCGCCAG CTATCTTACC
CCTGCGGTTT CCGTGTTTAG TGCTGAGCTG CATCAACCTA ACTCCAACGT GGTGGTCGGC
AAACTGAGCT TCTACATCGA TGGCTCATCA ATAGCCAAGG TGTTCATCGC CAAAACCACT
CGCGTACTGC TCTTCGACCT ATTACGTAAT ACGCTATTGA CGACCATTTT ACTGCTGTTT
TTCTACCAAA AGCTCTCTCG CCCAATCACC ATGCTGATCA CTTGGGTTAA CTCACTCAAT
GACACACAGC GCTCACCTCT GCCTCTTCGT CTTACTCATG ACGATGAACT CAGTGAGCTC
GCGTCGACGT TTCAATCGAT GTGGAAAGGC AAAGAGCTAG CAGAATCGAA ACTCAATCAA
TTGGCTTATT ATGACAGCCT CACTGGCCTC GCCAATCGCA GTTTGTTGCT GCAAAAATTG
AGTGATGCGA TTGAAACTGC GCAAAACTCG CACAGTACTG GCGTACTGTT CTATCTCGAC
TTGGATCGCT TTAAAACCAT TAATGACTCA CTCGGTCATA CCATCGGTGA CCAGTTGATT
AAAGCCGTGG CGCTGCGCAT GGAGGCATGG ACTAAAAACG ACTACCTGTC AGCACGAATT
GGTGGCGATG AGTTTGCAGT GCTGATCCCT TATCTCTCGC CTGCGAAAGC TGAGGAAGTG
GCCAAGCAGC TACTCACTCT GATTTCCAAC CCTTATGCGG TGGACGATCA CCAGTTCTAC
TGTACCGTGA GTATCGGGAT TTCGGTTTTC CCTTCCGTAG GAAGCTGTAA TATTGATGTA
TTACGTCAAG CGGATACCGC ACTGTATCGC GCCAAAGCCA GTGGGCGTAA CAAGTTCATG
TTCTATGAGC CGGAAATGCA GGCGCAGGTG GAGTCTTTCC TTGAAATTGA AAAAGGCTTG
CATGAAGCGC TCAATCAGCG CCAACTCGAG CTTTTCTACC AACCTCAGGT CGACGAGCAG
CACAACATTA TTGGTGTCGA AGCGCTGATC CGCTGGAACC ATCCTAAACG AGGGTTGTTG
CCTCCCGGTG TTTTTATGCC GATCGCAGAA GAAACAGGAC AAATTTTACC GATAGGCAAC
TGGATCATTG AGCAAGCGTG TTATCAATAT GCCCAGTGGA AAAAACAAGG CATTTTACCG
CCCCATTTTC GCCGTTTGGC GATCAATATC AGCCCACTAC AGTTTGCTCA GGAGTCTTTT
ATTGAGCAGG TGAACCACGC TTTACGCCAA GCAGGGATCA CGGGGGAGCC GATAGAATTA
GAGATAACTG AAAGCTTACT GCTGGAAAAC GTTGAGAGCG CCATAGAAAA AATGGCCAAG
TTGAAAGAGA GCCAAATCAG TATTTCGATT GATGACTTTG GAACAGGCTA CTCTTCGCTG
CGTTACCTCA AGCATCTTGC GGTCGATGTG CTGAAAATTG ACCGCTCGTT TGTCAATCAA
CTGCACCTTG ATGATAACGA TCAAGCGATC GTCGACACAA TCTTAGCGAT TGCCAGAAAA
CTGAATTTAG AAGTGATTGC CGAAGGGGTG GAAGACACCT CTGAGTTGGC CGCACTCAAA
AAACTGGGGT GTAACCAATT CCAAGGCTAC CTGTTTGATA AACCGCTGCG AGCCGAAGAG
ATTGCACAGC GTTTTGTCAG CAACAGTTAT CGCAAAATTC AAACCTTACC CGTTGCGACA
AACAGTTTAC AAAAATAG
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| Protein sequence | MTKFRKIHSL AFKQAKSVFL VSVLLGLCFS FYHTLSDLHQ EQSKVQEHYN FKLVQSYENA
SQAAYHLNNL LAEQVATTLM LDPGIFKVEI VDDFGDVMTR KEKAISEQSQ LVSVLASYLT
PAVSVFSAEL HQPNSNVVVG KLSFYIDGSS IAKVFIAKTT RVLLFDLLRN TLLTTILLLF
FYQKLSRPIT MLITWVNSLN DTQRSPLPLR LTHDDELSEL ASTFQSMWKG KELAESKLNQ
LAYYDSLTGL ANRSLLLQKL SDAIETAQNS HSTGVLFYLD LDRFKTINDS LGHTIGDQLI
KAVALRMEAW TKNDYLSARI GGDEFAVLIP YLSPAKAEEV AKQLLTLISN PYAVDDHQFY
CTVSIGISVF PSVGSCNIDV LRQADTALYR AKASGRNKFM FYEPEMQAQV ESFLEIEKGL
HEALNQRQLE LFYQPQVDEQ HNIIGVEALI RWNHPKRGLL PPGVFMPIAE ETGQILPIGN
WIIEQACYQY AQWKKQGILP PHFRRLAINI SPLQFAQESF IEQVNHALRQ AGITGEPIEL
EITESLLLEN VESAIEKMAK LKESQISISI DDFGTGYSSL RYLKHLAVDV LKIDRSFVNQ
LHLDDNDQAI VDTILAIARK LNLEVIAEGV EDTSELAALK KLGCNQFQGY LFDKPLRAEE
IAQRFVSNSY RKIQTLPVAT NSLQK
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