Gene VC0395_A0096 details

Gene Information

• Locus tag: VC0395_A0096
• Symbol: rimM
• ID: 5136848
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 87347
• End bp: 87901
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640531556
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001216061
• Protein GI: 147674058
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00000000752452
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGATGA AAGGTAAAGA GACGATGAGC AAGCAAAACG AAAAATTGGT TGTGGGAAAA 
TTAGGTTCTT CTTACGGCAT TCGTGGCTGG CTTAAAGTTT TTTCCTACAC AGACAATCCA 
GAAAGTATTT TTGATTACAG CCCTTGGTAT ATTGACCAAA AGGGCGAGTG GGTGGAATAC 
AAAGTAGAAG GCTGGAAACG CCACAACAAA GGTTGGGTGG TAAAACTTCA AGGGCTTGAT 
GTCCGCGAAG ATGCACATCT GCTGACTAAC TTTGAAATTG CCATTGACCC CGCATCACTA 
CCAGAATTGT CAGAAGATGA GTTCTACTGG CGTGAATTGT TTGGAATGCA AGTAGTGACC 
ACTAACGGCT ACGACCTTGG CGTGGTAACC GATATGATGG AAACAGGCTC CAACGATGTT 
CTCGTGGTGA AAGCGAATCT GAAAGATGCT TTCGGCCAAA AGGAACGGTT AATTCCGTTT 
CTTGAAGAGC AAGTGATCAA AGTTGTTGAT CGCCAAGCTC AACGGATCGA AGTTGACTGG 
GATCCTGCGT TTTAA 

 

Protein sequence

MSMKGKETMS KQNEKLVVGK LGSSYGIRGW LKVFSYTDNP ESIFDYSPWY IDQKGEWVEY 
KVEGWKRHNK GWVVKLQGLD VREDAHLLTN FEIAIDPASL PELSEDEFYW RELFGMQVVT 
TNGYDLGVVT DMMETGSNDV LVVKANLKDA FGQKERLIPF LEEQVIKVVD RQAQRIEVDW 
DPAF