Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0062 |
Symbol | rpoS |
ID | 5136575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 55517 |
End bp | 56524 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640531522 |
Product | RNA polymerase sigma factor RpoS |
Protein accession | YP_001216035 |
Protein GI | 147674644 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 57 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGTCA GCAATACCGT AACCAAAGTA GAAGAGTTCG ATTTTGAAGA TGAAGCACTG GAAGTGCTAG AAACTGATGC CGAGCTCACC AGTGATGAAG AATTAGTTGC TGTTGAAGGG GCAAGTGAAG ACGTTCGTGA AGAGTTTGAT GCTTCTGCGA AAAGTCTTGA TGCGACCCAG ATGTATCTCA GCGAAATTGG TTTTTCACCG CTCCTTACTG CCGAAGAAGA AGTGCTTTAT GCTCGTCGTG CCTTACGTGG TGATGAAGCC GCACGTAAAC GCATGATTGA AAGTAACTTG CGTCTGGTGG TAAAAATTTC ACGCCGTTAC AGCAACCGAG GATTAGCACT GCTCGATCTG ATTGAAGAAG GTAATCTTGG TCTGATCCGT GCGGTTGAGA AATTCGATCC AGAACGCGGT TTCCGCTTCT CTACCTACGC AACATGGTGG ATCCGTCAAA CCATTGAACG TGCGCTGATG AACCAAACAC GCACCATTCG TCTACCGATT CATGTCGTCA AAGAGCTGAA CATTTATTTG CGTACTGCTC GCGAATTATC ACAGCGCCTT GACCACGAAC CTACACCAGA AGAAATTGCT CTTGAGTTAG ACCGACCTGT CGATGATGTC ACTAAGATGC TGCGTCTTAA CGAACGGATC AGCTCAGTGG ATACGCCAAT TGGTGGGGAT GGAGATAAGG CACTGCTGGA TATTTTGCCA GACTCTCACA ATGCCGATCC TGAGTTTTCA ACTCAAGATG ATGACATTCG TGAATCGCTG CTCAACTGGT TGGATGAACT TAATCCAAAG CAAAAAGAAG TGCTTGCGCG TCGCTTTGGG CTTCTTGGCT ATGAACCATC GACCTTGGAA GAAGTGGGTC GTGAGATCAA TCTCACTCGT GAGCGTGTTC GCCAAATCCA AGTGGAAGGT CTACGTCGTC TGCGTGAGAT TTTGGTGAAA CAAGGTTTGA ATATGGAAGC GCTGTTTAGC GTCGAATACG ACAACTAA
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Protein sequence | MSVSNTVTKV EEFDFEDEAL EVLETDAELT SDEELVAVEG ASEDVREEFD ASAKSLDATQ MYLSEIGFSP LLTAEEEVLY ARRALRGDEA ARKRMIESNL RLVVKISRRY SNRGLALLDL IEEGNLGLIR AVEKFDPERG FRFSTYATWW IRQTIERALM NQTRTIRLPI HVVKELNIYL RTARELSQRL DHEPTPEEIA LELDRPVDDV TKMLRLNERI SSVDTPIGGD GDKALLDILP DSHNADPEFS TQDDDIRESL LNWLDELNPK QKEVLARRFG LLGYEPSTLE EVGREINLTR ERVRQIQVEG LRRLREILVK QGLNMEALFS VEYDN
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