Gene VC0395_A0057 details

Gene Information

• Locus tag: VC0395_A0057
• Symbol: ispF
• ID: 5136724
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 51544
• End bp: 52020
• Gene Length: 477 bp
• Protein Length: 158 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640531517
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_001216030
• Protein GI: 147673364
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 48
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCAGAA TTGGCCACGG CTTTGATGTA CACCGTTTTG GCGGCGAAGG TCCCATCATT 
ATTGGTGGAG TGAAGATCCC TTATGAACAA GGATTGATCG CCCATTCTGA CGGTGATGTG 
GCACTGCACG CATTAAGTGA TGCCTTGCTC GGCGCGATTG CTGCCGGAGA CATTGGCCGC 
CACTTCCCGG ATACCGATGA TAAATGGAAA GGGGCAGACA GCCGCGAGCT CCTCAAAGAT 
GTGTATCGCC GTGTCAAGGC GCAAGGTTAT GTGCTTGGTA ATGCGGACGT CACTATCATT 
GCCCAAGCGC CGAAAATGGC CCCTTATATT CAGGCGATGT GCGCGGCGAT TGCCGAAGAT 
CTGGAAACCG ATCTGGGCAA CATCAATGTC AAAGCGACCA CGACAGAAAA ACTCGGCTTT 
ACCGGACGTA AAGAAGGTAT TGCCTGTGAA GCGGTTGTAC TTTTGCGCAA AGCTTAA 

 

Protein sequence

MIRIGHGFDV HRFGGEGPII IGGVKIPYEQ GLIAHSDGDV ALHALSDALL GAIAAGDIGR 
HFPDTDDKWK GADSRELLKD VYRRVKAQGY VLGNADVTII AQAPKMAPYI QAMCAAIAED 
LETDLGNINV KATTTEKLGF TGRKEGIACE AVVLLRKA