Gene VC0395_0722 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0722 
Symbol 
ID5134736 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp782136 
End bp784583 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content52% 
IMG OID640531044 
Producthypothetical protein 
Protein accessionYP_001215558 
Protein GI147672186 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000480127 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGCCT TGCCTCCCGC ATCGCTCAAT CGCCGCTTAC TGCGTTGGAG CTTAAGTGAA 
ATTCGTCACG GGCAGTTATG GCCGGTGACT GTTGCGCTAA CCTTAATCAT TGCCTCGATT
TTTGCATTAA CCGCGCTCGC GCAGCGTATG GAACAAGTGA TTGTGAAACA AGGGCGTGAT
GCGTTAACCG CTGATACGGT ATTTGTTTCG GGCAACCCAC TTCCTGAGTC CTTATTGACC
CTGACCGCGC AGCAAGCTAG TCAAACTTCA CAAATGACCC GTTTTGCGAC CATGGCCTTT
AGCGATCAAG GCATGCAGTT AGTCACTGTC AAAGCGGTAG ATAGTGCTTA TCCACTGCGT
GGCGAGATGC GTTTAAGTGA TGGTCAGCAA ACCTTTAATC ATGTGGTGAG CAACCAACTT
TGGCTTGAAC CGCGAGTAAA AGATCAGTTA GGGGTGGATA TCGGTGACAA TGTCACGATT
GGTGATGCGG ATTTTGTGGT CAGCGGTGAA GTGTTGGAAG AGCCAGGACT GAGCTTTAAC
CCATTCCAGC AAATGCCATC GGTTTACATC CATGCCTCTG ATGTGGATAA AACTGGCGCG
ATTCAGCCGG GGAGTCGGGT GCAATTTAGC CTATTTATGA CTGGTGATGA CTCTGCGATT
GAATCGATAA AACAACAAGT GAGCTTAACG GCGAGCGATC GCTGGCGTGA TCAAGAAAGT
GGCAGCCGTA CTAATGAGGT GTTTGCACGC ACTCAACAGT ACTTATCGCT GACTGTAGCA
ATTGTGATCT TGATGGCCGC GACCACCTTA GTGCTGACCT GTCAGCATTA CGTTTCCACC
CGCACGCATA CGATTGCGAT GTTAAAAAGT CTCGGAGCAA GTCGCCGCTG GTTACGCCAT
TGGCTAGCGT TGCAAGTCGG ATTGTTACTG GTATTTGCGG TGGTGTTGGG CAGCGTTATT
GGTGTTGGGT TGGAGTCGCT GCTGCGTTTG CCACTAAAAG ATTTGTTGCC CGACCCGCTC
CCCAGTTACG GTTTGCGTCC GCTGTGGATT GCACTTGCCA GCAGCTTATT GATTGCGGTG
CCAGCTCTGG GGATCCCGCT GGGACGTCTA TTGAGCGTGA GTGCGGTTGC GGTCATGCAG
CCGGTGGCGG CGCAAACTCG TTGGCAGCGC AATCTACTGC TGATCATGGT ACCGATTGTG
CCGCTACTGC TGGTGTATGG GCAAAACCAA CTGATCTGGA TTGTGCTGAT CGGTATTGTG
GTGCTGTTTG CGGTGTTAGC GGTGGTCAGT GTTTTGGTGA CTCGTCTGCT GGCTAAGCTA
CCGCTTAATC CTGCGATGGC ATTGGCTCTG AGCCGAATTA ACCGCTCTGT TGCAGCAAGT
GGTTTGCAGT TTGGCGCGTT AGCTCTCTCT TTGATGTTGC TCGCCATCAT CTGGTTAGTG
CGTACCGATT TGCTCTCAGA TTGGCAGCGC ACCTTGCCGG AAAATGCGCC GAATGCGTTT
GCACTCAACA TCAGTGAATC CGAAAAGGCC AGTTACCTTG CGGCATTAGA TACAGCAAAC
ATTGAGCGCT CTGCTGCTTA TCCCATCATG CGTGGGCGTT TAACGCATAT TAACGGTCAA
GAGGCGAAAC AATACGCGCA AAATGGTGAA GAGAGTTCAG ATGCGCTGCG CCGTGAGCTG
AATTTAACCT GGGCAGAGCA GTTACCCGAT TACAACCCCA TTTTGCAAGG AGAGTGGCAA
AGCCAAAATG GCGTATCGGT TGAGCAGGAA GTGGCGAGCG ACCTCGGGCT TAAACTTGGG
GATACGCTGA CGTTTATGAT CAATAGTCAA ACAGTGAGCG CGCAAGTGAA CACCATTCGT
CAGGTCGAGT GGCGTGAAAT GAAGCCCAAT TTTTACTTCA TTTTTAGTCC GGACGTGGTG
CAAAACTTGC CAGCCAGTTA TTTGATCAGT TTCCGCATTC AGCCCGAACA TGATGCGTTG
CTCGGTCAGC TCTCACGGCA ACACCCGACG GTGAGCTTGA TGGACATTCG CACCATGGGA
GCCAAAATCC AAGCCTTGTT GACCCAAATT GTTTGGTCTG TGACGGTGTT GGCGGCACTG
GGTGTGCTAG CAGGGGTATT GCTGATTTTT ACTTTGCTGC GCTTAAGCCT CAGTCAGCGT
CAGCAGGAGA TCCGCCTGTA TCGCACGTTA GGGGCGAGTC GCCGCCGAGT TATGCACACC
ATTTGGGCTG AGTATGGAGT GATGGCGTTA GTCGGAGGGT TAGTGGCCAG CGTGAGTGCT
GATGCAGTCG TCGCTGCGGT CATGAAATGG GGATTTAGCC TGACTCCGAG TCTGCATATG
GCGCTGTGGT TTGTGCTCCC TGCGTTGACT TTTTGCACAC TTGCTGCGGT TGTGAGCAGT
TTGTTGAAAC GCCTGTTAGC CCCCGTCAAT AAAGCCTTCA GCGATTGA
 
Protein sequence
MKALPPASLN RRLLRWSLSE IRHGQLWPVT VALTLIIASI FALTALAQRM EQVIVKQGRD 
ALTADTVFVS GNPLPESLLT LTAQQASQTS QMTRFATMAF SDQGMQLVTV KAVDSAYPLR
GEMRLSDGQQ TFNHVVSNQL WLEPRVKDQL GVDIGDNVTI GDADFVVSGE VLEEPGLSFN
PFQQMPSVYI HASDVDKTGA IQPGSRVQFS LFMTGDDSAI ESIKQQVSLT ASDRWRDQES
GSRTNEVFAR TQQYLSLTVA IVILMAATTL VLTCQHYVST RTHTIAMLKS LGASRRWLRH
WLALQVGLLL VFAVVLGSVI GVGLESLLRL PLKDLLPDPL PSYGLRPLWI ALASSLLIAV
PALGIPLGRL LSVSAVAVMQ PVAAQTRWQR NLLLIMVPIV PLLLVYGQNQ LIWIVLIGIV
VLFAVLAVVS VLVTRLLAKL PLNPAMALAL SRINRSVAAS GLQFGALALS LMLLAIIWLV
RTDLLSDWQR TLPENAPNAF ALNISESEKA SYLAALDTAN IERSAAYPIM RGRLTHINGQ
EAKQYAQNGE ESSDALRREL NLTWAEQLPD YNPILQGEWQ SQNGVSVEQE VASDLGLKLG
DTLTFMINSQ TVSAQVNTIR QVEWREMKPN FYFIFSPDVV QNLPASYLIS FRIQPEHDAL
LGQLSRQHPT VSLMDIRTMG AKIQALLTQI VWSVTVLAAL GVLAGVLLIF TLLRLSLSQR
QQEIRLYRTL GASRRRVMHT IWAEYGVMAL VGGLVASVSA DAVVAAVMKW GFSLTPSLHM
ALWFVLPALT FCTLAAVVSS LLKRLLAPVN KAFSD