Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0683 |
Symbol | glpF |
ID | 5134265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 748108 |
End bp | 748962 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640531005 |
Product | glycerol uptake facilitator protein |
Protein accession | YP_001215522 |
Protein GI | 147672325 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
TIGRFAM ID | [TIGR00861] MIP family channel proteins |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 0.962847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCAAA CAAAGCAACA TACTCTGCTC GGGCAGTGTA TCGCCGAGTT TATCGGTACA GGATTACTGA TTTTCTTCGG CGTCGGCTGC GTGGCCGCAC TCGTTTTAGC AGGTGCTCAA TTCGGACAGT GGGAAATCAG CATTGTCTGG GGTTTTGGCG TATCGATTGC CATTTATTGT ACGGCTGGGG TTTCTGGCGC GCACATTAAC CCTGCCGTCA CTATCGCTCT GGCCGCTTTC CACGGTTTTG ATAAAGCGAA AGTATTACCT TACATCATTT CGCAAGTGGC TGGTGCGTTT TGTGCGGCGG CACTGGTCTA CAGCTTGTAC AGCAACCTTT TTACCGACTA CGAAATCGCC CACAATTTTG TACGTAGCAG CCAAGAAGCC TTAGCGACTG CGGGGATCTT CTCAACTTAT CCGCATGCTT CTCTCTCTTT TATGGGAGCC ATGGCCGTTG AGTTCACCAT TACAGCGGTA CTGATGTTCG CGATTTTGGC GTTGGGTGAT GAAAACAATG GCGCGCATCG CAATGCGATG AACCCCTTGC TAATTGGTAT TTTGATTGCG GTGATTGGTG GCTCATTAGG CCCATTGACG GGATTTGCCA TGAACCCTGC GCGTGATTTC GGTCCTAAAC TGTTTGCCTA CTTCGCGGGA TGGGATTATG CCCTAACTGG CGCAAAAGAG ATCCCTTACT TCATCGTACC GATTGTGGCT CCGATTCTGG GCGCATGTTT TGGCGCGTGG GCATATCCAA AGTTTATCGC GGCTTATCTG CCAAAAACGG GTACGGGTTG CACTATTCCG AACCAATGTG ACACGGCAGA AGAGAGTGAA GAAGCGCGCG CATAG
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Protein sequence | MNQTKQHTLL GQCIAEFIGT GLLIFFGVGC VAALVLAGAQ FGQWEISIVW GFGVSIAIYC TAGVSGAHIN PAVTIALAAF HGFDKAKVLP YIISQVAGAF CAAALVYSLY SNLFTDYEIA HNFVRSSQEA LATAGIFSTY PHASLSFMGA MAVEFTITAV LMFAILALGD ENNGAHRNAM NPLLIGILIA VIGGSLGPLT GFAMNPARDF GPKLFAYFAG WDYALTGAKE IPYFIVPIVA PILGACFGAW AYPKFIAAYL PKTGTGCTIP NQCDTAEESE EARA
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