| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0667 |
|---|
| Symbol | |
|---|
| ID | 5134546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 733328 |
|---|
| End bp | 735994 |
|---|
| Gene Length | 2667 bp |
|---|
| Protein Length | 888 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640530989 |
|---|
| Product | DNA repair ATPase |
|---|
| Protein accession | YP_001215506 |
|---|
| Protein GI | 147672427 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGGCT CAATTTGGAC TAAATGGGAT TTACATATTC ATTCTCCATA TACACATCAA
GCAAACGAAT TCGGCAGTAC CACAATAGAT GAGTTTGTTA ATAAGGTGAT TTCTTCAAAC
CTCAGTCTGA TTGCTATAAC TAATTACTTC TTTTTTAAAG AAGATGAACT AGATGAAATT
AGGGATAAAT TTAAGGAAAA AGGTGCTGAA GTCACGGTTT TAGGTAATCT CGAATTTCGT
ATTGACCAAC AAAATAAAGA AGGCGAATGG ATCAATGTGC ATTGTATTTT TTCGGAAAAT
ATTACCACTC GCAAGATAAA TACCATTCTG TCTACCCTCC CAATTTCTAA CACCACCGCT
GAACGAAAAA GTATTTATTG CTCACAGCTG TCTTTATCTG ATGCCCAAAC TAAAATTTCT
GAAGTGATGG TGAATTTCGA TGGGCTAATT CAGCATTTGA ATAGAAACTT AAAATTTGGA
GTAGATTTCT TGATTGCTGC CTGTCCAAAT GGTTATGGTG GATTTAGACC TGACGTAACT
GAAGGGCGGT CTTTGGCTGC TGCATTAGAA ATAGAGAAAA GGTGCCAAAT CATACTTGGA
AGACCTCAAG ATCGGCCGTT TTTTCTGGAT CAAAACAGAT ATCAATCTGC TATACAAAAG
CCCGTTTTTT TTGCTTCTGA CTCCCATAAA TTAGAAGAAA TTGGAAAAAA ATACTCTTGG
GTTAAAGCTA AGCCTACATT TGAAGGTTTA AGACAAGCCA TTATTGAACC AGATTTAAGA
GTTCAGCAAA CTGACGATTT TGTTGAAAAA ACGTATATTA AACCATGGTT TAAATCGGTT
GAACTAGGCG GGAAGGTTTT TGAAGGTGAG GAAATTACTT TCTTAAGTCA GAAAATTCCA
CTAAACCCCA ACCTTATTAC GATAATTGGT GGGAGAGGGA CGGGTAAAAG CCTATTTTTA
GATGCGATGC ACTCAAGGTT TAATCATCGG GCTGAGCACT CTAATGCACG AAAAGTTAGC
GGTGAAAGTC TTTGTGTTGA GTTAGATCAG GGCGATGGAA CAGTGCTGAA ATTTGATTCT
TCGGCAAACA CCTATTCCTA TTTGCATGTA TCACAAGGAG ATGTTCAGCA TTTTAGCCAA
AAGCCTGATG ACTTGAGTGA CGAAATCAAA AGAATGCTAG GAATACATGG TATTCAATTT
GATTCAGTTG CCAGCTCTGA AATAGTTAAC AATTTAAGCA AGTACCAAAC ATTCGTTCAA
TATTGGGAAG ATACTGATTC ACAAGGGCAG CGAATAAATA CACAAGGTTA CCAACAAAGT
GTTATTGATA GTAACACTCA GTTAATTGCT ACACTTACTA ATCCTCAGAA CAAATTACTT
ATTGAAAGTT ATCAGAAAAA CTCAAAAAGT ATTAATGAGA AGAATAGATT CATTGAAGAG
GCAAGAAATA TGGTAGCTTT AATTAATCGT TACGCTACCG AATTAAATCA AAAGATTGCA
CTCTTAAACT CAAACGCTTG CTCAGTAAAT CAGTCACCTT TAGTTGATGA GTCTATATTC
AAAGATCCAA TAAATGAAAA TATTAAAAAC TGCAAGGATG AAATGGTAAT TCTGGAAGAT
AATAATAAAG AAATAGCTCT TCAATTTCAG AAGCAAGGCA TCAGTCAAGA TATTTCATCC
CTGCTTGGAA AAGTAACAGA ATATCAAAAA TCTATAGATC AAGCGTCAGC AAAATTGGTA
GAGATAAATC AGAAAACTTC TGAATATCAT GAGTACGTTC AGAAGCGTGG CGAGCTGGCA
CTTAGCTATA AAAATTACCT AAATAGCCAA AAAGAAAGTA TCGATAATGC ATTTCAAAGA
CTCAAGGTGA AACAGCCGAG TTGGAATGAT GAACAAAATG ATTTGGTTCA GAATATTCTT
GTCGATATAA ACATCAATGG TAGAGTGGTA TTTAATGTAG AGCAGTTTTA TGCAGGGATT
GAAGAGTGCT TAAATAAAGG TAAGTTTAGG AACACAAGTG AAAAATCCAC CTTTGAAAGG
TTGCAAGAAA CTTTTTGTGT TAAATCAATC GATGACTTAT TCAAGCTTGT GGCAGGTGAA
AAAATAATTA ACTGTGATGG CACCCCGACA AGTATCGAAG AGTTTTTTTG GAAACCTGAA
TATTTTAACA AAGGTGGGCG GTTCGAGCTG CTGAGTTACC TATATATACC TTCAAATATT
AGAAAATATC TTTATGTAAA TGCTGACTTC CAATACAAAG GGAAAGAAGT AAATAAACTG
TCAGTAGGTC AACGAGGTAC TTTTTACGTA TGTTTGAAAT TAGCTACGGA TCCATTCGGC
AGTCCATTTG TCTTTGACCA ACCTGAGGAT GATCTTGACA ACGAGTTTAT TATGGCTCAG
CTTGTGCCAC TATTTAGAAA AATAAAGAAA TATCGACAAG TAATTATTGT TACTCATAAT
GCTAATCTGG TCGTTAATAC TGACGCTGAG CAAGTTATCG TTGCTGATAA TCAGGGCGAA
AATATACGTT ACAGAGCTGG TTCTGTTGAA GACGGTAATG TCAAAGATAA TTCAGGGATA
AGAGCTGATA TTTGTAACAT TCTGGAAGGC GGGAGTTATG CTTTTGAGAA AAGAGAGAGA
AAATACGGTA TCCAAGAATT TGCCTAA
|
|---|
| Protein sequence | MIGSIWTKWD LHIHSPYTHQ ANEFGSTTID EFVNKVISSN LSLIAITNYF FFKEDELDEI
RDKFKEKGAE VTVLGNLEFR IDQQNKEGEW INVHCIFSEN ITTRKINTIL STLPISNTTA
ERKSIYCSQL SLSDAQTKIS EVMVNFDGLI QHLNRNLKFG VDFLIAACPN GYGGFRPDVT
EGRSLAAALE IEKRCQIILG RPQDRPFFLD QNRYQSAIQK PVFFASDSHK LEEIGKKYSW
VKAKPTFEGL RQAIIEPDLR VQQTDDFVEK TYIKPWFKSV ELGGKVFEGE EITFLSQKIP
LNPNLITIIG GRGTGKSLFL DAMHSRFNHR AEHSNARKVS GESLCVELDQ GDGTVLKFDS
SANTYSYLHV SQGDVQHFSQ KPDDLSDEIK RMLGIHGIQF DSVASSEIVN NLSKYQTFVQ
YWEDTDSQGQ RINTQGYQQS VIDSNTQLIA TLTNPQNKLL IESYQKNSKS INEKNRFIEE
ARNMVALINR YATELNQKIA LLNSNACSVN QSPLVDESIF KDPINENIKN CKDEMVILED
NNKEIALQFQ KQGISQDISS LLGKVTEYQK SIDQASAKLV EINQKTSEYH EYVQKRGELA
LSYKNYLNSQ KESIDNAFQR LKVKQPSWND EQNDLVQNIL VDININGRVV FNVEQFYAGI
EECLNKGKFR NTSEKSTFER LQETFCVKSI DDLFKLVAGE KIINCDGTPT SIEEFFWKPE
YFNKGGRFEL LSYLYIPSNI RKYLYVNADF QYKGKEVNKL SVGQRGTFYV CLKLATDPFG
SPFVFDQPED DLDNEFIMAQ LVPLFRKIKK YRQVIIVTHN ANLVVNTDAE QVIVADNQGE
NIRYRAGSVE DGNVKDNSGI RADICNILEG GSYAFEKRER KYGIQEFA
|
|---|
| |