Gene VC0395_0636 details

Gene Information

• Locus tag: VC0395_0636
• ID: 5134569
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: +
• Start bp: 695619
• End bp: 697547
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640530958
• Product: sensory box/GGDEF family protein
• Protein accession: YP_001215475
• Protein GI: 147671427
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGATTCGTT CTATAGTATG CACTCAACGA CTTATACATC GAATTATGTA CACCTCTGCC 
CGTAAATATT TCATACAATT TGCCATTGTT GCGTTTGTAC TTGGTTTCAT TCCTACACTG 
TATTTCATAC ATGCTGCTAG CCAGCTTGAG ACTCAAGCGG TCAGCAGCGT TGAAAAACAG 
ACTCGCTTAC AACTTGAGTT CAGTCAGCAT GACTTGTTAC GAATGCTGGA AAGCACACAC 
CAAGCCACCC AGCTGTTAGC TAAAAATGAC CTTTTATTCA CGGCTGTCAC CACACCAAGT 
AAAGAAGCAC TCAGTCAACT CAAAACATTG TGGGATGTGA CGTTAAGATC GCAAGCGATT 
TTCTCTTCAT TCAGATTGCT GGATAGACAA GGAAAAGAAC AACTTAAAGC GATTTACGAT 
GGGCACCAAG TCACCTTTGT TGAATCTGCT CAAACGACAG ATCCGTTCAG CCAGCAAATT 
GTGGCTCAAT ACGCCCAACT CACGACGCCT CAAGTTTGGG CAACGCAAGT CGCGATGTCA 
GCAGATACGC CTTCTGGTAT GCTGCCGACC TTTCGTTTTG TGACGGGTAT TGAGCATCAA 
GGCCAACGGC AAGGTTTTCT TGTCGTGACG GTGAAGCTAC AGTCTCTCTA TCAACGTCTC 
TCTTTTATTT ATGATCAGTT TGATTCACCG GATATTTTGA ATTCGGCAGG AGAATTACTG 
CTCAGTGAAC ACAAGCCATC CGGTACACGT TCAACCTCTT CACTCCACTT TTCAGCCCAA 
CACCCAGAGC TTTGGCAAAA AATCCAACTC AACCAACAAG GCTTTGCTCT ATCCAATCAA 
ACCTGGTTTA GCTATATCAA AGTGGATCTC AGTTCTGTCT TACCTGACTT TAAACCTTTG 
GTATTGGTAC TGCGCATCAA TAAGGCAGAA ATAGATAAGA CCTACGCAAA TGCGCGCTGG 
GCACTGATGA GTCAAGCGGT GACAGTGTTA TCGCTACTCT CTATCATTGC GGCTGGATTT 
GCGGCATGGA ACATCAACCA TTTAAAAAAT AGCCTTGACA GTAAATTGGC TCGAACAGCG 
ATGGATGGCA TGTCAGCGGT GGTCATTACC GACCGCCAGA ATCGCATCAT CAAAGTAAAC 
AACGAATTTA CCCGCCTAAG TGGTTACACT TTTGAAGATG TCAAAGGTAA GCAGCCGTCC 
ATTTTTGCTT CTGGATTACA CAAAGTCGAA TTCTATATGC AGATGTGGAA AGCTCTGCAA 
GACAATGGCG TATGGGAAGG TGAAGTGATC AACAAACGCA AAGATGGCGA AAGCATCACC 
GAAATTCTCC GTATTCAAAG CATCCGCGAT GAAGACAATG TCATTCAATT CTACGTTGCC 
TCTTTTGTGG ATATTTCACA TCGCAAGGCG CTGGAGAATC GCCTGCGTGA GCTGAGCGAA 
AAAGATGCGT TAACCGATTT GTGGAATCGA CGTAAATTCG ATCAAACCAT CTCTTTAGAG 
TGCGCTAAGC GTCGCCGTTA TCCCGATCAA GCCCAGAGCT GCCTTGCTAT CATTGATATC 
GACCACTTTA AACGCATTAA CGACAAATTC GGACACAACG AAGGGGACCT AGTGTTACGG 
ACCGTTGCGA AAGGCATCCA AGATCAGTTA CGGGAATCGG ATTTTATCGC ACGGATTGGC 
GGAGAAGAGT TTGCCATTAT TTTCCCCTAC ACTTCCATTG AAGAAGCCGA ACAAGTACTT 
AACCGCGTAC GCCTGCATAT CGCTTCATTA CACCATCAAC AAGTGACCCT AAGTGGTGGT 
GTTACCGATG TTTGCACATC ACCCGACCAA AGCTACAAAA GAGCCGATCT GGCTTTATAT 
GAATCCAAAA CATCGGGACG CAACCAAATA TCAGTACTCA CCGCCATGGA AATGCATCAC 
TTTGCGTGA 

 

Protein sequence

MIRSIVCTQR LIHRIMYTSA RKYFIQFAIV AFVLGFIPTL YFIHAASQLE TQAVSSVEKQ 
TRLQLEFSQH DLLRMLESTH QATQLLAKND LLFTAVTTPS KEALSQLKTL WDVTLRSQAI 
FSSFRLLDRQ GKEQLKAIYD GHQVTFVESA QTTDPFSQQI VAQYAQLTTP QVWATQVAMS 
ADTPSGMLPT FRFVTGIEHQ GQRQGFLVVT VKLQSLYQRL SFIYDQFDSP DILNSAGELL 
LSEHKPSGTR STSSLHFSAQ HPELWQKIQL NQQGFALSNQ TWFSYIKVDL SSVLPDFKPL 
VLVLRINKAE IDKTYANARW ALMSQAVTVL SLLSIIAAGF AAWNINHLKN SLDSKLARTA 
MDGMSAVVIT DRQNRIIKVN NEFTRLSGYT FEDVKGKQPS IFASGLHKVE FYMQMWKALQ 
DNGVWEGEVI NKRKDGESIT EILRIQSIRD EDNVIQFYVA SFVDISHRKA LENRLRELSE 
KDALTDLWNR RKFDQTISLE CAKRRRYPDQ AQSCLAIIDI DHFKRINDKF GHNEGDLVLR 
TVAKGIQDQL RESDFIARIG GEEFAIIFPY TSIEEAEQVL NRVRLHIASL HHQQVTLSGG 
VTDVCTSPDQ SYKRADLALY ESKTSGRNQI SVLTAMEMHH FA