Gene VC0395_0520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0520 
Symbol 
ID5134122 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp576697 
End bp577680 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content45% 
IMG OID640530842 
Productputative transposase 
Protein accessionYP_001215359 
Protein GI147671805 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value0.693676 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCTATGG ACAGAGAAAT CCAACAAAGA CTACAGTGGG TAAAAATGTA TGAGGAATGT 
GGTGATGCAG GCCTCGTATG TCGACGCTGT GGTATTTCCA GACCAACATT ACGAAAGTGG
GCTAAGCGAT ATAAGCAATG TGGAATCGCT GGTCTGGAAA GCCAGAGCAG ACGCCCTCAT
TCATCTCCAG ATACCAAACT CACTGATGAG CTAAGAGCAT TGATCCTTAC GATGCGTGAC
AAACGCAATT TAGGGGCGCG ACGTTTACAA ACGGAATTAA TCCGACTTCA CAAAATACAC
CTAAGCACAG CGACACTCCA TAAAGTTTTA TCCGAAGCAT CAGTCAAACC CATCGTAACT
TACCGACGCA AAAAAGATTT CCAAAGATAT GAGCGCCCAA TTCCTGGTGA TAGAGTCCAG
ATGGACACGT GTAAAATAGC GCCTGGAATT TACCAGTATA CAGCTATTGA TGATTGCTCT
CGCTATCGGG TTCTAAGGTG CTACTCTCGG CGCACAGCAG CAAATACAGT CGACTTTATC
GATTGTGTCG TGGAAGAGAT GCCATTTCCT ATCCAGCGTA TTCAGACGGA CAGAGGGCGT
GAATTCTTTG CTGAAAAAGT CCAGAAACAA CTCATGATTT ATGGGATCAA GTTTCGCCCA
AATAAGCCTG GCTCACCTCA CTTGAATGGC AAAGTGGAAC GCTCGCAGAA AACAGATAAA
AGTGAGTTCT ATCCGACCAT AGATGTCTCT GTGGGGCTGC AAGAACTGGA TCTGCTACTA
GCTGAATGGC AACACTACTA CAACTGGGAA CGGCCCCACA GCTCGTTAAA TGGGCTAACC
CCGATAGACA GGATTACTGA GATATCTGAT CAAACTCCTT TGTCTGAAGA GGTATCTCAG
AACTACCAGA TCAAGAAAGA GCGGTTTCAA GAGCAAAATT ACAAGCTCGA TCTTCAGCTA
AGAAAATTGA AACCATCTCT ATGA
 
Protein sequence
MSMDREIQQR LQWVKMYEEC GDAGLVCRRC GISRPTLRKW AKRYKQCGIA GLESQSRRPH 
SSPDTKLTDE LRALILTMRD KRNLGARRLQ TELIRLHKIH LSTATLHKVL SEASVKPIVT
YRRKKDFQRY ERPIPGDRVQ MDTCKIAPGI YQYTAIDDCS RYRVLRCYSR RTAANTVDFI
DCVVEEMPFP IQRIQTDRGR EFFAEKVQKQ LMIYGIKFRP NKPGSPHLNG KVERSQKTDK
SEFYPTIDVS VGLQELDLLL AEWQHYYNWE RPHSSLNGLT PIDRITEISD QTPLSEEVSQ
NYQIKKERFQ EQNYKLDLQL RKLKPSL