Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0419 |
Symbol | speA |
ID | 5134840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 461782 |
End bp | 463767 |
Gene Length | 1986 bp |
Protein Length | 661 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640530742 |
Product | arginine decarboxylase |
Protein accession | YP_001215260 |
Protein GI | 147672120 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00340731 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACATCTA GGGTGTCAGG TGTGATTTCA ACCGATGAAA TCATTGTAAT CCTCTCTGTT TTTGTGAGAT ACGATGTGGA ACAACCATCC AAATTAGACC GCGTTCGCGC TGACTACAAT GTGCATTACT GGAGCCAAGG CTTTTTTGGC ATTGACGATC AAGGCGAAGT GTATGTGTCG CCGAGAAAAG ACAAAGCTCA TCAAACGCAA TTAAGCTCAA TTGTTAAACA GCTCGAAGCG CGCGATTTAA ATTTGCCTGT GCTTGTACGC TTCCCGCAGA TCCTGCATCA ACGCGTGCAC AACATTTGTG ACGCTTTCAA TCAGGCGATT GAAGAGTACG ACTACCCAAA TAAATACCTG CTGGTTTATC CCATCAAAGT GAACCAACAA AAAGAGGTAG TAGATGAAAT TCTGGCCAGT CAGGCCGAAT TAGAACACAA ACAACTCGGC TTAGAAGCGG GCAGTAAGCC TGAACTTCTG GCGGTGTTGG CTATGGCTCA GCAAGCCAGT TCAGTGATTG TATGTAATGG TTACAAAGAC AGAGAGTACA TTCGTCTGGC ACTGATCGGT GAAAAACTGG GTCACAAAGT TTTCATCGTT CTGGAAAAAC TGTCAGAGCT GGATCTGGTC CTGAAAGAAG CGAAAAGCCT TGGCGTGAAA CCACGTCTGG GTCTGCGTAT TCGTCTTGCT TCTCAGGGTG CAGGCAAATG GCAATCGAGC GGCGGTGAAA AATCGAAGTT CGGCCTAGCT GCATCACAAG TGCTCACCGT GATTAACCGC TTGAAAGCGG AAAATCAACT GGAAGCACTG CAACTGGTGC ATTTCCACCT TGGTTCACAA ATGGCGAACA TTCGTGACGT GCGTAATGGT GTGAACGAAG CGGTGCGTTT CTACTGTGAA CTGCGTGAGC TGGGTGCGCA CATCGATTTC TTCGACGTGG GTGGCGGCTT GGCCGTGGAT TACGATGGTA CTCGTAGCCA GTCATCAAAC TCGATGAACT ACGGTCTGCA CGAATATGCG CGTAACATCG TGAGCACAGT GAGCGATGTG TGTAACCTGT ACGGTCAGCC TCGTCCGGTG ATCATTTCTG AATCGGGTCG TTCGATCACG GCGCACCATG CGGTATTGAT CACCAACGTT ATCGGTACGG AAGCCTACTC GCCAGAAGAG ATCCCAGCAC CGGGTGCGGA TGCGCCAATG CTACTGAAAA ACATGTGGCG TGGGTTTGAA GAAGTGCAAC ACGGTACCGA TGACCGCGCA CTGATTGAAA TTTACAACGA CACACAGAGC GATCTTTCTG AAGCGCATAG CCAGTTTGCA ACGGGTGTAT TAAACCTTGA GCACCGTGCA TGGGCAGAGC AGTTGTCACT GCGTATCTAC CATGAACTGC GTCAGAAGAT GAGCAACAAA AACCGCTTCC ATCGCCCGAT TCTGGATGAG CTGCAAGAGC GTTTAGCAGA CAAGTTCTTC GTGAACTTCT CACTGTTCCA GTCGCTGCCG GATGCTTGGG GTATCGATCA AGTGTTCCCA GTGCTGCCGC TTTCTGGTTT GGAAGAGATG AACGATCGTC GCGCAGTAAT GCTCGACATC ACCTGTGACT CAGACGGTGC GGTTGAACAG TACGTTGAAG GCCAAGGTAT TGAAAGTACA CTGCCTGTGC CAGCATGGAC GAGTGACAAG CCATACCTAA TGGGCTTTTT CCTGGTCGGT GCATACCAAG AAATCTTGGG CGATATGCAC AACCTGTTTG GTGACACACA CAGCGCGGTT GTGAATATTA ATGATAATGG CGAGTCTGAA ATTGCCTTTA TCAATGAAGG TGACACGGTT GAAGATATGA TGCGCTACGT TCACATCGAT GTAGATAAAA TTCGCACCAA CTATCGTCAA CTGGTTTCTC AACGTGTTGC CAAAGAAGAA CAAGAGACCG TTTTGGCGGA ACTTGAATTA GGCCTGAGCG GCTATACTTA CTTAGAGGAT TTCTAA
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Protein sequence | MTSRVSGVIS TDEIIVILSV FVRYDVEQPS KLDRVRADYN VHYWSQGFFG IDDQGEVYVS PRKDKAHQTQ LSSIVKQLEA RDLNLPVLVR FPQILHQRVH NICDAFNQAI EEYDYPNKYL LVYPIKVNQQ KEVVDEILAS QAELEHKQLG LEAGSKPELL AVLAMAQQAS SVIVCNGYKD REYIRLALIG EKLGHKVFIV LEKLSELDLV LKEAKSLGVK PRLGLRIRLA SQGAGKWQSS GGEKSKFGLA ASQVLTVINR LKAENQLEAL QLVHFHLGSQ MANIRDVRNG VNEAVRFYCE LRELGAHIDF FDVGGGLAVD YDGTRSQSSN SMNYGLHEYA RNIVSTVSDV CNLYGQPRPV IISESGRSIT AHHAVLITNV IGTEAYSPEE IPAPGADAPM LLKNMWRGFE EVQHGTDDRA LIEIYNDTQS DLSEAHSQFA TGVLNLEHRA WAEQLSLRIY HELRQKMSNK NRFHRPILDE LQERLADKFF VNFSLFQSLP DAWGIDQVFP VLPLSGLEEM NDRRAVMLDI TCDSDGAVEQ YVEGQGIEST LPVPAWTSDK PYLMGFFLVG AYQEILGDMH NLFGDTHSAV VNINDNGESE IAFINEGDTV EDMMRYVHID VDKIRTNYRQ LVSQRVAKEE QETVLAELEL GLSGYTYLED F
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