| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0347 |
|---|
| Symbol | |
|---|
| ID | 5134967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 380175 |
|---|
| End bp | 381587 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640530670 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001215188 |
|---|
| Protein GI | 147672334 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTACCG TTACTACACC TCAACCGACG GCGGCTGCGC GTCGTAAGAC CCTCTATTTT
CTCACTTGGC GTTGGCATTT TTATGCGGGC CTGTTTGTGG TGCCTTTTAT GTTGATGTTG
GCGCTGACGG GCTTAGTCAT GTTGTTTGAT GATGAAATTG AACAAGCTCG CTATGCCGAG
GTATTAAACG TTACACCACA AGCGCAGGTC ATGCCTGTTT CTCAGCAGCT TGCGGCAGTA
CAAAAGGCGT ATCCAGAAGC GCAAGTTACC CAGTTTATTC CTGCGCTTCA GCCGGATTTA
GCCAACCGTT TTTCTGTACT GTTTAGCGAT GGTTCAACCC AATTTGTCAC GGTTAATCCG
TATAGCGCTG TGGTTCTGGG CACTATTGAT CGTAGCGAAA GCTGGTATGA ATGGGCGAAC
AGCATTCACG GCACCTTATT GATTGGCGAT TGGGGAGATT ATTTGATTGA AGTCGCGGCG
AGCTTGGGGA TGATTTTACT GGTGAGTGGT ATCTACTTAT GGTTGCCGCT TGATAACGCG
CGTAAAGCGG GGTTTCTCAA AATCCGAGTG GGCAGTGGTG CGCGAATTTT CTGGCGTGAC
CTGCACGCAA ATTTAGGTGG CATGCTGTCC TTAGTACTGC TGTTTTTCCT GATTTCCGGT
CTTTCGTGGG CGGGCATTTG GGGCGGGAAA CTGGTGCAGG CATGGAATAC CTTCCCGACG
TATTACACTT GGGGAGAAAA ACCGCAATCG GTACTCACGC ATGCGGATTT AAACCATGGC
TCAGAAAAAG AGATGCCTTG GAACTTAGAG CAAACGCCAG TACCGCAATC GCATCATCAT
GGGGGTGAGC ATGAAATGGT TGCGGTTAAT CCTCAATTCG GTATCGACCA AGTGATCGCT
CAGGCCAAGG CGCTCGGTTT TACGCAGTAC CGCGTTGCTT TTCCGCGTGG GGAAACGGGC
GTGTATACCG TTTCTGCCAA TACCATGGCG GGTGATATTG TCGATCCACG TGATGATCGC
ACTGCGCATT TTGACCAATA TTCTGGTGCG TTACTCACCG AGGTCACTTG GCAAGATTAT
TCGCCATTTG CCAAAGCAAT GGCGGCGGGG ATTTCGCTAC ACCAAGGCGA TCTGAGTGTA
TGGAACAAAA TAGCCAACGT GCTGTTTTGT CTCGCTTTCA TTCTGATCTC TGTCACAGGT
GTGGTGATGT GGTGGCTGCG CCGCCCGACC GGTCAAGCTC GGCTAGGTGT TCCGCCACGT
TTTGAGCAAG ATGGAGTATG GAAAGCAGGC TTAGCCACGT TACTGGTGAT TGGTGTGGCA
TTCCCACTGG CGGGAGCGAC GATAGTGTTG GCTTTGCTGC TTGATGGGTT ACTGGTGAGT
CGTATTGCTA AGCTGAAAAT CGCTTTCAGT TAA
|
|---|
| Protein sequence | MSTVTTPQPT AAARRKTLYF LTWRWHFYAG LFVVPFMLML ALTGLVMLFD DEIEQARYAE
VLNVTPQAQV MPVSQQLAAV QKAYPEAQVT QFIPALQPDL ANRFSVLFSD GSTQFVTVNP
YSAVVLGTID RSESWYEWAN SIHGTLLIGD WGDYLIEVAA SLGMILLVSG IYLWLPLDNA
RKAGFLKIRV GSGARIFWRD LHANLGGMLS LVLLFFLISG LSWAGIWGGK LVQAWNTFPT
YYTWGEKPQS VLTHADLNHG SEKEMPWNLE QTPVPQSHHH GGEHEMVAVN PQFGIDQVIA
QAKALGFTQY RVAFPRGETG VYTVSANTMA GDIVDPRDDR TAHFDQYSGA LLTEVTWQDY
SPFAKAMAAG ISLHQGDLSV WNKIANVLFC LAFILISVTG VVMWWLRRPT GQARLGVPPR
FEQDGVWKAG LATLLVIGVA FPLAGATIVL ALLLDGLLVS RIAKLKIAFS
|
|---|
| |