Gene VC0395_0088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0088 
Symbol 
ID5134839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp96666 
End bp97796 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content50% 
IMG OID640530411 
Producthypothetical protein 
Protein accessionYP_001214929 
Protein GI147672478 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0000928582 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTAC TGCTGATCCT GACTTACACC GCCCTGTGTG TTGCAGTTTT TAAGGTTTTC 
AAAATTCCAC TCAATAAGTG GACAGTGCCC ACCGCAGTGC TCGGCGGCGT GATACTGATT
GGAACCCTGA TCTTGCTGAT GAACTACAAC CACCCTTTTA CTCAGTTGGG AAGCCAAGTC
TATTCGACTA CTCCGATTGT GTCTGGAGTA CGAGGACGGG TGGTGGAAGT TCCTGTGAAA
CCAAACCAGC CACTGACACA AGGTGATGTT CTGTTCCGTA TTGATCCTAT CCCCTTCGAG
GCTGACGTTG CTCGCTTAAA AGCCAAAGTC AAAGAAGCGA GTCAAGGGGC CTTGGGGTTA
GAGTCTACTT TAAAAGAGGC GCAAGCGGCT GTACTCAAAG CCATCGCAGA GCGAGACAAA
GCGCAACGTG AATATGATCG TTATCAACGT GGTTATCAAC GTGGCGCATT TACTGAACAG
CAAATGGATA CCACTCGCCA AACTTACAAA GCCGCGCAAG CCGCCTTGGA GGTTGCACAG
TCAAAACAAG AGCAAGCCCA AATCGCTTTA GATTCGGAAG TCGGTGGTGA AAATACCACG
GTCGCTCAGC TCTTAGCGGA ACTGCGTAAA GCGGAATTCG ATTTGGAGCA AACCATCGTG
CGTGCCCCAA CGGATGGCTA TGTTACTCAG TTGGCTTTGC GTCCGGGCAT GATGTCTGTC
CCTTTGCCTC TGGCTCCTGT CATGACTTTT GTGCATACGG AAGAGAAAAT CTACACTGCG
GCTTTCCGCC AAAACTCTCT ACAACGTCTA CAACCGGGAT TTGCCGCTGA ATTTATGTTC
CGCGCACTGC CAGGTAAGGT ATTTAAAGGA GAGGTGATTG AAGTGCTACC CGCGATCGGA
GAAAGCCAAA TCCAAGCCCG TGGTGCTTTA CTTGGGACAG ACGCGCTCAG AACCTCTGGA
CGCGTTTTTG TAACGCTGCG CATTACTGAT GATTTATCGC AGTACCATCT GCCTATGGGT
TCCGCGGTTG AAGTCGCGGT GTACTCTGAC AGCTTTGAAC ATGTTTCTAT CATGCGAAAA
GTACTTATCC GCATGAAAAG TTGGCAGAAC TACCTCTACC TCGATCACTG A
 
Protein sequence
MDLLLILTYT ALCVAVFKVF KIPLNKWTVP TAVLGGVILI GTLILLMNYN HPFTQLGSQV 
YSTTPIVSGV RGRVVEVPVK PNQPLTQGDV LFRIDPIPFE ADVARLKAKV KEASQGALGL
ESTLKEAQAA VLKAIAERDK AQREYDRYQR GYQRGAFTEQ QMDTTRQTYK AAQAALEVAQ
SKQEQAQIAL DSEVGGENTT VAQLLAELRK AEFDLEQTIV RAPTDGYVTQ LALRPGMMSV
PLPLAPVMTF VHTEEKIYTA AFRQNSLQRL QPGFAAEFMF RALPGKVFKG EVIEVLPAIG
ESQIQARGAL LGTDALRTSG RVFVTLRITD DLSQYHLPMG SAVEVAVYSD SFEHVSIMRK
VLIRMKSWQN YLYLDH