| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0057 |
|---|
| Symbol | emrD-1 |
|---|
| ID | 5134203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 57896 |
|---|
| End bp | 59107 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640530380 |
|---|
| Product | multidrug resistance protein D |
|---|
| Protein accession | YP_001214898 |
|---|
| Protein GI | 147672367 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.0307213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCAC AAACCTCTAC TCGTTTTCGC CGCACCCCCA TGCTACTTGC GATGATGATC
ATCGCTACTG GCCAAGTGGG TGTGAGCATT TATTTGCCCT CACTGCCTCT GATTAGCCGT
GATTTACAGG TCGATCAAGC GAGTGCGCAG ATGCTCGTCA CGCTCTTTTT ACTGGGTTTT
GGTGGCTCAC AGCTATTTTA TGGCGCACTG TCCGATGCCG TAGGCCGACG CCCGACGTTT
TTGCTTGGGC AAGGTATCTA TTTGCTAGGT ACTGTGCTCT GCGTGATGAT GTCGGATCAT
TTTCAAGCTC TTGAATTTGG ACGCTTATTG CAAGGATTAG GGGCGGGCAG TGCTTCGGTA
CTTGGGCGTA GTGTGTTGCG AGACAGCTAT GATGGTTTCC ATCTGACCAA AGCTCTCTCA
TATCTCTCAA TCACCGCCTC AATCATGCCA ATTATTGCAC CAGTCCTTGG CGGATGGCTG
GCGTACCATT TAAGCTGGCA GTCGGTGTTT ATTTTTGTGC TGCTCTATAT TGGAGCGATT
TTTACGCTCG GGTTGATGAT CCTGCCAGAA ACGCTGCCTT ACCCAAAACG GCGAGTTCAA
TGGCGTGGCA TTGTGATTAA CTACGCTAAA CTGCTTACTA ATCAACAAGT CACCAGTAGT
GCAAGTTACA ACTGGTTAAG TTATTTAGCC AGCTTGGTCA CCTTATCCAT TTTGCCCTTT
CTGCTCCAAA AACAGCTAGG TATGACCGCA GCCGATTACG GATCGACCCT TATTATTCCC
TCTTCAGGTT TATTACTGGG CAGCGTGCTT GTAAACATGC TGACTTCTCG TTTTTCGGTG
CGTCAATTGC TGGGGTGTGC GATTAGCTTG ATGGTATTTG CGGGCCTTTG GCTGCTGCTG
ACCGAATTCT CCGTGTTTAA CCTGATTTGG GCTTTTACTT GGCTGAGCAT CGCGCAGGGC
ATCTCTTTTC CATTGGCTAC AACGCTTTTG TTATCACCTC ATAAATCACA AGCGGGGGCG
GTTTCTGCGC TTTCTGGTTC GATTCAGATG GGGATCGCAG GTTTACTGGG AGGATATTTG
GTGGAGCATT GGGTGACTAG CCAAAATGCA ATGGGTGTGT TTTATATTCT GGTCGGCATC
ACGATGTTGA GTGTGTTGAT CGCAACGAAA AAAGCGCACT CGCAGCCTAG CGCTGCGCAA
GTGCCGATGT AA
|
|---|
| Protein sequence | MNAQTSTRFR RTPMLLAMMI IATGQVGVSI YLPSLPLISR DLQVDQASAQ MLVTLFLLGF
GGSQLFYGAL SDAVGRRPTF LLGQGIYLLG TVLCVMMSDH FQALEFGRLL QGLGAGSASV
LGRSVLRDSY DGFHLTKALS YLSITASIMP IIAPVLGGWL AYHLSWQSVF IFVLLYIGAI
FTLGLMILPE TLPYPKRRVQ WRGIVINYAK LLTNQQVTSS ASYNWLSYLA SLVTLSILPF
LLQKQLGMTA ADYGSTLIIP SSGLLLGSVL VNMLTSRFSV RQLLGCAISL MVFAGLWLLL
TEFSVFNLIW AFTWLSIAQG ISFPLATTLL LSPHKSQAGA VSALSGSIQM GIAGLLGGYL
VEHWVTSQNA MGVFYILVGI TMLSVLIATK KAHSQPSAAQ VPM
|
|---|
| |