| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0028 |
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| Symbol | |
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| ID | 5134258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 31613 |
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| End bp | 33382 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640530351 |
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| Product | hypothetical protein |
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| Protein accession | YP_001214869 |
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| Protein GI | 147672162 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.167709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCAAG ACAAGTATTT CAGGGAAGAG CTCGCTTTTT TAAAAGAGCA GGGGAAAGAA
TTTACCGAAA TTCACCCTCA GCTTTCGCGT TTTCTTCATG GCCGTACGAC CGATCCTGAC
GTTGAGCGTC TTTTGGAAGG TTTTGCATTT CTTACCGCGC GTTTGCGCGA AAAGGTGGAG
GATGAGTTCC CTGAACTTAC TCACTCCATC ATTAACATGC TGTGGCCAAA TTATCTGCGC
CCTATCCCGA GCATGAGTGT GGTGGCGTTT GAACCTGACA AAAGTGTCAG CGAGAAGCAA
GTCATCCCAC GTAATACCCA ATTGGATAGC AAGCCAGTCT TTGGCACGGC GTGTCATTTC
AACACTTGCC GTGATGTCGC GCTATATCCG ATGCAGTGTC AAGGTGTTCA TGCCGAGCAC
ACACGTGAAG CCACGACCAT TCAGATCTCG TTGCGCATGT TGGGCGATAT GACAGTAGGC
GACGCTAAGC TCGATACCGT ACGTTTTTAC TTAGGTGGTG ATAAATACAG CTCGCAAACT
CTCTATCTTT GGTTACACCA TTATCTACAA AAAATGACGA TTGAAGTGCA GGGTGTCGAG
TTCGCACTGC CTGCTGATGC GTTTTCAACC GTCGGTTTCT CAAGTGACCA AGCTTTGCTG
CCTTATCCAA AGAATGTCTA TGACGGTTAT CGTATTTTGC AAGAGTACCT GTCGTTTCCT
GAAGCCTTTC ACTTCTTTGA TGTAAAAGGT TTTGCCAAAG CTTTACCGAA AGCGGTCAGC
GGTGATTTCA CCTTACGCAT CCATTTTTCG AAAACATTGC CTGCTGATAC GCGAGTGCGT
CAGGACAATT TTCAACTCTA TTGCACACCG GTCATCAATC TGTTTGAGCA TGATGCCGAT
CCGATCGATT TGACTGGGCG TCGTTCAGAG TATCGAATCG TCCCGTCCAG TCGCTATCCT
GCCCACTATG AAATTTTCAG CGTGGATCAA GTGGTTGGTT GGCAAGATAC CCAGTCAGAA
GGCAAACGGA TCCGCGGAGA AAAGCGTATC TACTCTTCTT TTGAAAGCTT CCAACATGAA
GTGGAACGGG TTCGTCATCG TCAAGCGCTT TACTATCGCA CACGAGTCAA AGAGAGCATC
CGGGGGGATG GTTTTGATTC ATTTATCTCT TTTGTGCGCG GTGATGAAAC CTTATCAATG
GGCGTAGATG AAGCCGTCTC AATCAAACTC ACCTGCACCA ATCGCTTGCT GCCATTGGAA
CTTGGGGTGG GGGATATTTG TGTGGCGACC GACAGCTCAC CCCCTTTTGC CACATTCAAA
AATATTACGG TGCCTTCGCA GTCACTGCGC CCGGTTCTCG ATGGCAGCTT ACTGTGGACG
CTGATCTCGA ATCTATCGCT GAACTACCTA TCACTGCTCT CAAAAGATGC ACTGAGCTGT
GTGCTACGCG CTTACGATTT TCGCGCCTTG GTCGATAGGC AAGCTGAACG TGTCGCACGG
ATGCGCCTTG ATGGCATAGT CAAAATAGAA TCTAAACCGG TTGATAAAAT CCTACGTGGT
TTGCCTGTGC GTGGTTTGCA ATCGACTTTG TATGTCGATC AAGCGGGATT TGGCTCGGAA
GGTGATTTGT TCCTGTTTGG TACGGTACTC AGTCATTTCT TTGCACTTTA CGCCAGCATC
AACTCATTTC ACGAATTAGT CGTGGTTAAC ATCAGCAATC AAGAGAAGTA CTCATGGGGC
ACACAGAGCG GAATGCAGCC GTTGATCTGA
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| Protein sequence | MTQDKYFREE LAFLKEQGKE FTEIHPQLSR FLHGRTTDPD VERLLEGFAF LTARLREKVE
DEFPELTHSI INMLWPNYLR PIPSMSVVAF EPDKSVSEKQ VIPRNTQLDS KPVFGTACHF
NTCRDVALYP MQCQGVHAEH TREATTIQIS LRMLGDMTVG DAKLDTVRFY LGGDKYSSQT
LYLWLHHYLQ KMTIEVQGVE FALPADAFST VGFSSDQALL PYPKNVYDGY RILQEYLSFP
EAFHFFDVKG FAKALPKAVS GDFTLRIHFS KTLPADTRVR QDNFQLYCTP VINLFEHDAD
PIDLTGRRSE YRIVPSSRYP AHYEIFSVDQ VVGWQDTQSE GKRIRGEKRI YSSFESFQHE
VERVRHRQAL YYRTRVKESI RGDGFDSFIS FVRGDETLSM GVDEAVSIKL TCTNRLLPLE
LGVGDICVAT DSSPPFATFK NITVPSQSLR PVLDGSLLWT LISNLSLNYL SLLSKDALSC
VLRAYDFRAL VDRQAERVAR MRLDGIVKIE SKPVDKILRG LPVRGLQSTL YVDQAGFGSE
GDLFLFGTVL SHFFALYASI NSFHELVVVN ISNQEKYSWG TQSGMQPLI
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