| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1779 |
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| Symbol | |
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| ID | 5170739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1788651 |
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| End bp | 1789298 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640564300 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001245355 |
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| Protein GI | 148270895 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000143574 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTTCTTT TCAATCTGGA CAACTTCGAA AGCGAAGATG CATTCAACGA AGTCTCCCTT
GAATTGGTAA GGCTGTTTGC AACATACACA AAAATCCTCT TTGAGCGATT GAAAGTCGAA
GAAGAGCTGG CAGAGAAAAC TCGGCTTTTA GAGGTCTTTT CTTACTACGA TCCCCTCACA
GGTCTTCCCA ACAGACGGCT GATGGAAGAG TTGAGCAAAA AGTTGTTAGC TCTTGCAAAA
AGGGAAGGAA AGGAGATTGC TGTGGTTTTC CTGGATCTTT CGGGATTTAA AAAGATAAAC
GACACGTTCG GACATGAAGC GGGTGATCAG ATTTTGAAGG AGGTTAGCAC CAGACTGAAA
AGAGTCTTGA GAGAAAATGA TGTTATTGCA AGGTTTGGAG GAGATGAATT CGTGTTCATC
ATATACGACT GTGGGAAAGA TTGTATAGAG ACTGTTTTGA GAAGAATCTT GAACTCTCTG
GAAAAACCAC TCGACATAGA AGGACAGAAA GTGCAGATCT CTGGAAACTT CGGAGTGGCT
TTCTACCCGA AAGATGGAGA AGAGTTCAAC AATCTTCTCA GGAAGGCAGA TTTTGCCATG
TACCTGGCAA AAAGAAATAA GGAACATGTC AGATTCTACG AAGAGTAA
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| Protein sequence | MVLFNLDNFE SEDAFNEVSL ELVRLFATYT KILFERLKVE EELAEKTRLL EVFSYYDPLT
GLPNRRLMEE LSKKLLALAK REGKEIAVVF LDLSGFKKIN DTFGHEAGDQ ILKEVSTRLK
RVLRENDVIA RFGGDEFVFI IYDCGKDCIE TVLRRILNSL EKPLDIEGQK VQISGNFGVA
FYPKDGEEFN NLLRKADFAM YLAKRNKEHV RFYEE
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