| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1358 |
|---|
| Symbol | |
|---|
| ID | 5170197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1349271 |
|---|
| End bp | 1349801 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640563883 |
|---|
| Product | glycerol-3-phosphate responsive antiterminator |
|---|
| Protein accession | YP_001244948 |
|---|
| Protein GI | 148270488 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1954] Glycerol-3-phosphate responsive antiterminator (mRNA-binding) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.000981936 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAAG GAATAATAGC CGCGCTGTGG GACATGGATT CCGTAGGAGA AATAGAGCCC
GATGTGGTCT TCCTTTTGAA AAGCGACATT TTGAGTTTGA AGTTCTACCT AAAAATTCTA
AAAGACAGAG GAAAAACCGT TTTTGTTGAT ATGGATTTTG TGAGCGGACT TGGGGAGGGG
GAAGAAGCGG TTCTGTTCGT GAAAAAGGCC GGTGCCGATG GTATCATTAC GATAAAGCCA
AAAAATTACA TCATCGCAAA AAGAAACGGG GTTCCCGCTG TCCTCAGATT CTTTGCTCTC
GACTCGAAAG CGGTCGAAAG AGGTATCGAA CAGATCGAAG CACTCGGAGT AGATGTGGTG
GAAGTTCTTC CGGGGGTGGT GGCCCCAAAG GTGGCTAAAA AAATACCCGG CAGGACCGTG
ATCGCCGCCG GGCTCGTTGA AACAGAGGAA GAAGCTCGTG AAATTCTCAA ACACGTTTCG
GCGATCTCTA CAAGTTCAAG AACCCTCTGG AAGATGAGGT TTCTACCATG A
|
|---|
| Protein sequence | MFKGIIAALW DMDSVGEIEP DVVFLLKSDI LSLKFYLKIL KDRGKTVFVD MDFVSGLGEG
EEAVLFVKKA GADGIITIKP KNYIIAKRNG VPAVLRFFAL DSKAVERGIE QIEALGVDVV
EVLPGVVAPK VAKKIPGRTV IAAGLVETEE EAREILKHVS AISTSSRTLW KMRFLP
|
|---|
| |