Gene Tpet_1334 details

Gene Information

• Locus tag: Tpet_1334
• ID: 5171417
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: +
• Start bp: 1326723
• End bp: 1327388
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 640563859
• Product: single-stranded nucleic acid binding R3H domain-containing protein
• Protein accession: YP_001244924
• Protein GI: 148270464
• COG category: [R] General function prediction only
• COG ID: [COG1847] Predicted RNA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0000542188
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA TTGTGGAAAG GGCTCCTACA GTGGAGGAAG CGGTTGAAAA AGTGGTCAAA 
AAATACGGTC TCGGAGAAGG AGAGTACACG GTCAACGTGT TGGAAAAAGG ATTTCATGGA 
ATATTCGGCC TCTTTTCAAA AGAAGCGGTT GTCGAGGTGC AGATCACCAA AGCTTACTTT 
GAAAGAAAAT TGAAAGAATT TTTAACTGAG ATTTTGCAGG TGGTAGATTC AGAAGTCAAA 
ATAACTGTGA AATCTTCTGG AAGGAGTTTC TTTGTTGACG TGGAGAGTGA AAACGTAGGA 
AGGCTCATAG GTAAACACGG AAAAACCATG GGAGCACTTC AGCATATAGC GATGATCTTC 
CTCAACAGAT TGAGTGATAC GAAGCTGAAC GTGATTCTGG ATATGGGAGA TTACAGGGAA 
AAGCGGAAGA AATCTCTTGA GAAAATAGTG GAAGAGGCTG TCAAAAAGGC TATTTCCGAG 
AAGACCAAAG TAGTACTGGA TCCCATGTTT TCTTTTGAGA GGAAAATTGT TCACAAACTT 
GTGAGAAAAC ACAGAGGTGT GATAAGCTAC TCAGTCGGTG TAGAACCTTA CAGAAGAGTT 
GTGATAGAGT ATTCTGGAAC GAGGCGAGAG GGGAGAAGAA AACATGATAT TAAAGAAAGC 
ATATGA 

 

Protein sequence

MKKIVERAPT VEEAVEKVVK KYGLGEGEYT VNVLEKGFHG IFGLFSKEAV VEVQITKAYF 
ERKLKEFLTE ILQVVDSEVK ITVKSSGRSF FVDVESENVG RLIGKHGKTM GALQHIAMIF 
LNRLSDTKLN VILDMGDYRE KRKKSLEKIV EEAVKKAISE KTKVVLDPMF SFERKIVHKL 
VRKHRGVISY SVGVEPYRRV VIEYSGTRRE GRRKHDIKES I