| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1319 |
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| Symbol | rpsD |
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| ID | 5169994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1315371 |
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| End bp | 1316000 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640563844 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001244909 |
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| Protein GI | 148270449 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000360982 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGAGAT ATACAGGACC TCTTTGCAAG CTTTGCAGAA GAGAGGGAAT GAAACTCTAT
CTTAAAGGAG AAAGGTGTTA CACCGATAAG TGTGCTTTTG ACAGAAGACC TTACGCACCG
GGTCAGCACG GTCAGAGAAG AGCCAAGCTC ACGCAGTACG GTATACAGCT CAGAGCAAAG
CAAACCGTCA AAAGAATCTA CGGCATACTT GAAAGACAGT TCGAAAGGTA CGTGGAAAAA
GCTATGCAGA AGGCAGGAGA CACTCGAGAG AACTTGATCC AGATACTTGA AGCCAGACTG
GACAACGTCG TGTACAGAAT GGGATTCGCT ATAAACAGAA GACAGGCAAG ACAGCTGGTT
AATCACGGAC ATTTCCTCGT GAATGGAAAG AAAGTGAATA TACCGAGTTA TCTTCTGAAG
CCGAACGATG TAGTTGAATT GAGAGAAAAA AGCAGAGACC TCGAAGTGAT CAAAAAGGCT
GTAGAAGCCA ACAAAGAAAG AAGCGTTGTA CCCTGGATAG AAGTCGATTA CGACAACTAC
AGAGGCACTT TCCTGAGATA TCCGAGCCTT GAGGAAGTTA CCGATCTTCC AGTCGATCTT
CAGACAGTTA TCGAATTCTA CTCGAGGTGA
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| Protein sequence | MARYTGPLCK LCRREGMKLY LKGERCYTDK CAFDRRPYAP GQHGQRRAKL TQYGIQLRAK
QTVKRIYGIL ERQFERYVEK AMQKAGDTRE NLIQILEARL DNVVYRMGFA INRRQARQLV
NHGHFLVNGK KVNIPSYLLK PNDVVELREK SRDLEVIKKA VEANKERSVV PWIEVDYDNY
RGTFLRYPSL EEVTDLPVDL QTVIEFYSR
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