| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1275 |
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| Symbol | |
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| ID | 5170752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1287221 |
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| End bp | 1288381 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640563800 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001244865 |
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| Protein GI | 148270405 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000162613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGACATCT TGTGGAAAGT GGCAGAGATC CATGGGACAC CCGCTTACGT GTACTTCGAG
GAAACACTGC GAAAAAGAGC ACGTCTTGTA AAAGAGGTCT TCGAGGGGGT GAACCTCCTT
CCGACGTTTG CTGTGAAGGC GAACAACAAT CCTGTTCTGC TGAGGATTCT AAGAGAAGAA
GGTTTCGGAA TGGACGTGGT GACAAAAGGA GAACTCTTCG CGGCTAAACT GGCGGGAGTT
CCTTCTCATT CCGTTGTATG GAACGGCAAT GGAAAGAGCG TGGATCAGAT GAAACACTTT
TTGAGAGAAG GCGTGAGGAT CATCAACGTG GATTCGTTCG AGGAGATGGA GATCTGGAAG
GAATTGAACC CGGAGGGCGT GGAGTATTTC ATTAGGGTGA ATCCGGAAGT CGACGCGAAG
ACACATCCTC ACATCTCCAC CGGCTTGAAA AAGCACAAGT TCGGAATACC ACTGGAAGAT
CTGGACCTAT TCATGGAAAG ATTCGGATCA ATGAACGTAA AAGGTCTTCA TGTTCACATA
GGATCACAGA TAACACAGGT TGAACCCTTT GTGGAGGCCT TCGACAAAGT CGTCCGGGCT
TCTGAAAGGT TTGGATTCGA AGAGATCAAC ATCGGTGGCG GCTGGGGAAT AAACTACAGT
GGAGAAGAAC TCGACCTGTC CAGCTACAGA GAAAAGGTTG TTCCTGCCTT GAAGAGATTC
AAAAGGGTCA TCGTTGAAAT AGGAAGGTAC ATCGTAGCAC CTTCCGGGTA CCTGCTTCTC
AGGGTAGTAC TCGTCAAAAA AAGAAGTAAC AAAACGTTCG TTGTGGTCGA TGGAGGGATG
AACACCCTCA TAAGACCGGC ACTTTACTCC GCGTATCACA GGGTTTTCGT TCTTGGAAAA
CAGGGTAAAG AAGTGAGAGC GGATGTGGTT GGCCCTCTGT GCGAAAGCGG TGACGTGATC
GCGTACGACC GGGAACTTCC AGAGGTCGAA CCGGGTGACA TCATCGTTGT GGAAAACGCG
GGAGCCTACG GCTACACCAT GTCGAACAAC TACAACTCAA CCGTACGTCC GGCTGAGGTG
CTCGTCGGAG AAGGCGGAGA GATCTCTCTG ATAAGAAGGA GAGAGACAGA GATGGACATC
TTCAAAGACG TGGTGATGTG A
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| Protein sequence | MDILWKVAEI HGTPAYVYFE ETLRKRARLV KEVFEGVNLL PTFAVKANNN PVLLRILREE
GFGMDVVTKG ELFAAKLAGV PSHSVVWNGN GKSVDQMKHF LREGVRIINV DSFEEMEIWK
ELNPEGVEYF IRVNPEVDAK THPHISTGLK KHKFGIPLED LDLFMERFGS MNVKGLHVHI
GSQITQVEPF VEAFDKVVRA SERFGFEEIN IGGGWGINYS GEELDLSSYR EKVVPALKRF
KRVIVEIGRY IVAPSGYLLL RVVLVKKRSN KTFVVVDGGM NTLIRPALYS AYHRVFVLGK
QGKEVRADVV GPLCESGDVI AYDRELPEVE PGDIIVVENA GAYGYTMSNN YNSTVRPAEV
LVGEGGEISL IRRRETEMDI FKDVVM
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