Gene Tpet_1099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1099 
Symbol 
ID5169967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp1128498 
End bp1129250 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content41% 
IMG OID640563616 
ProductCRISPR-associated Cas family protein 
Protein accessionYP_001244689 
Protein GI148270229 
COG category[L] Replication, recombination and repair 
COG ID[COG1583] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01877] CRISPR-associated endoribonuclease Cas6 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000187286 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGATTGA AAGTTTCTTT TCAGGCGATG GAAAGCACTA TTCCGTTGAA TTACAACTAT 
TTTCTTTCTT CTTTCATCTA CAAGAGATTG GCTTCACAGA ATGAAAACTT TGCCAGATTC
CTTCACGAGA AGGGTTATGG GAAGAGGTTC AAGTTTTTCA CTTTTTCACA ACTTTTCTTT
GAAAATTCCA GAGTCAGCGG TGAGAAAATA TTAATATTTC CAGGAAAGGG GTGGTGGTAC
ATCTCATCAC CAGTTATTGA GTTCGTCAGG TACATGTTTT CTTCTCTCTC CGAAGATCCC
GTGATCAGGG TGGAAAAAAC AGAGTTCATC GTGAAATCCA TTGACATCGA AAATTCTCTT
CCTGATCAGT CGGAGTACCA CTTTGTCATG CTGTCACCAC TTGTGGTCAG TGTACCAGAA
GAAAACAACG GAAAGCTTTA CCACAGGTAT CTTCATCCGG AAGAAGAAGA GTTCTACGAA
GTTTTCAGAA AGAATCTTGT GAAGAAGTAC AGGGCTTTTT ACGGAAAAGA ACCAGAAGGC
ACTGTTGAAG TCATTCCCGA TTGGGATTAC ATCAAATCAC GTCAGCGGAT AACCAAAAGG
ATCAAATTGA AAAACGCGTT CGTCAGAGCT GTGGTTTTCC CGTTCAAAAT CAGGGGCGAG
AAAAAACTTG TAGAGATCGG CTATGAAGCG GGTTTTGGAG AGAAAAATAG CATGGGATTC
GGAATGGTAG CCTTGAAAAA ATATGAGAGG TGA
 
Protein sequence
MRLKVSFQAM ESTIPLNYNY FLSSFIYKRL ASQNENFARF LHEKGYGKRF KFFTFSQLFF 
ENSRVSGEKI LIFPGKGWWY ISSPVIEFVR YMFSSLSEDP VIRVEKTEFI VKSIDIENSL
PDQSEYHFVM LSPLVVSVPE ENNGKLYHRY LHPEEEEFYE VFRKNLVKKY RAFYGKEPEG
TVEVIPDWDY IKSRQRITKR IKLKNAFVRA VVFPFKIRGE KKLVEIGYEA GFGEKNSMGF
GMVALKKYER